Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01306 ATGATGTTACATTTTCAGGGTGTATCAAGACATTGTAGTCTCCTTGCTGTTTTGAGTGGTAAATCACATGATACTAAACAAAAGCAGAAGGAGAATGATGCTTCTGAGGATCAATATTCATCGTACCACTTTCCAGAGCTTTCTTCGTCCGGGCGTCTCGAGGTTAAAGTATTGAATAAACCTAGTGCCGATGAACTCGGTCGAGTTTTAGAACAACTGCAGCCGGATTTTGTTTACTTGCAAGGTCAGCAGCTAGATGATGGGGGAGAAATTGGGTCTCTTGTGTGGGAGGATTTTGACCTCTCTACCCCAGAAGCCTTGTGTGAATTATTTTCTTCCAAATTACCTAATACTGTTTACTTGGAAACTCCCAAGGGTGAAAAATTGGCAGAGGCACTCCATTCTAAGGGAGTTCCTTACACTATATACTGGAAGAATGATTTTTCAAAGTATGCGGCGTCGCATTTTCATCAAGCTTTCTTCTCAGTGGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGCGTGCAAAACAATGTCATACCTCACAACAGTCGGAAGGGTGGTGGTAAGCTCGGGCCACAAGTTCTTGGGGAACCCCCTAACATCGAAGTTAGTCCATGtgaagaagacatgaaggaagaagatgaagatgatgaaAGTTCACCTGGGACTAGTTCTTCTATAAAGATATACGATGATGACGTGAATACAAGATTTCTTGTTTGTGGAGTTCCGTGCACATTGGATGCATGTTTATTGGGGTCGTTAGAGGATGGACTCAATGCTCTCCTATGTACAGAAATACGTGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCACCACCTCTCCAGGCAGGAACATTCTCGCGTGGTGTGGTGACTATGCGTTGTGATATATCCACATCTAGTTCCGCTCATATATCACTTTTGGTTTCTGGTAGTGCAGATGCTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAGCTCACTGAGAATAGTCAACTTGTTCAGGCAATTCCTAGTCATGAACAAAACAAATTACCTTCCTACGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTAAGACAACTTGCACCAAATATGTCATACCGCAGCCTAGTTATGTTGGGAATAGCTAGTATTCAAGGATTGCCAGTTTCATCTTTTACTAAAGATGACGCAGAACGTCTCCTTTTCTTTTGCACTAGGCAGGAGAACGATAACTGCTCCAAAGATATTGTTTTCTCGAGTCACCCGGGTTGGTTGATGCCTCCTGCACCTAGTCGAAAACGATCTGAACCATGCTCAAGACTAAAACCTATTAATGCTAGTGGCGTGGAAGTTGAAGATAGTGGCAGTGATAGACAGAAATTAAATTTCACTGCAATGAGGCCGATCCCTCAGTCTCATCGTCAAAAGTTTCTCCCCTTTTCTGGATTTTCCGAGGGAGAAAGAGACGGAGACCATGGAAAATCAAATCAGCTAATTGTTCCAATTAAACATAATGGTTTAGGCCCCCATTCAGTTACAAACAGGAAATCTGTGTCGAACTCGTTTCAAGCTCACCAGATAATATCATTGAATCCGCTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGACTTCCTGAAGGATGTAATGCAATTTTTGGTCCTTCGAGGGCATACTCGCCTAATTCCACAAGGCGGCCTTGCCGAGTTCCCTGATGCCGTTCTGAATGCTAAACGTCTTGACCTTTTCAACTTGTATAGAGAGGTGGTTTCGAGAGGAGGATTTCACGTCGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTAACACATAGAATGACAGGTGTTGGCAATACACTCAAAAGGCATTATGAAACTTACCTTTTAGAATACGAATTATCTCACGACGATGTAGATGGAGAGTGCTGCTTATTGTGTCATAGTAGTGCAGCAGGTGATTGGGTGAACTGCGGTATATGTGGTGAGTGGGCTCATTTTGGCTGTGATAGGCGGCAGGGACTCGGAGCATTTAAGGACTACGCTAAAACTGACGGGCTGGAGTACGTTTGTCCGCACTGCAGCATATCAAATTTCAGTAAAAAATCTCAGAAAACTGCAAATGGTTATTAA 2268 0.4242 MMLHFQGVSRHCSLLAVLSGKSHDTKQKQKENDASEDQYSSYHFPELSSSGRLEVKVLNKPSADELGRVLEQLQPDFVYLQGQQLDDGGEIGSLVWEDFDLSTPEALCELFSSKLPNTVYLETPKGEKLAEALHSKGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLAQASFRLYCVQNNVIPHNSRKGGGKLGPQVLGEPPNIEVSPCEEDMKEEDEDDESSPGTSSSIKIYDDDVNTRFLVCGVPCTLDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNMSYRSLVMLGIASIQGLPVSSFTKDDAERLLFFCTRQENDNCSKDIVFSSHPGWLMPPAPSRKRSEPCSRLKPINASGVEVEDSGSDRQKLNFTAMRPIPQSHRQKFLPFSGFSEGERDGDHGKSNQLIVPIKHNGLGPHSVTNRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRVCSEEDFLKDVMQFLVLRGHTRLIPQGGLAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELSHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTANGY 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01306 755 CDD PHD_ARID4_like 688 739 - -
Car01g01306 755 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 755 - -
Car01g01306 755 ProSiteProfiles ARID domain profile. 578 682 IPR001606 GO:0003677
Car01g01306 755 MobiDBLite consensus disorder prediction 198 239 - -
Car01g01306 755 Pfam ARID/BRIGHT DNA binding domain 581 678 IPR001606 GO:0003677
Car01g01306 755 Gene3D - 576 678 IPR036431 GO:0003677
Car01g01306 755 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 755 IPR042293 -
Car01g01306 755 SUPERFAMILY FYVE/PHD zinc finger 679 743 IPR011011 -
Car01g01306 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 747 IPR013083 -
Car01g01306 755 SUPERFAMILY ARID-like 579 693 IPR036431 GO:0003677
Car01g01306 755 CDD ARID 580 678 - -
Car01g01306 755 SMART ARID_2 575 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01306 Car-Chr1 18020700 18026943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01306 2 754 ARID Transcription Factor Family AT3G43240 64.861 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car01g01306 ARID 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01306 - - gmx:100775894 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01306 01 18020700 18026943 Car01g01306 01 18020700 18026943 ECH