Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01305 atGAGTGTCAACACGACGGCGACGACAACAACAAGAGGCGGCGCTCCTCCGTCAACGGCTGAGATTATCGACGTCGAATCATTTCACTTCTCTCGTCGCACAAAAAACAACACCTCCATCTCCGCCGCCATCGTTCTTTCTGACACAGAAGACGATGATGACGTTAGAATCCTCAATTTCATTCCCAAAAATATCCCTTTCAAAAAACGAAAAAGAATTGAAAAAGGAGAGTCTTCAAATTCAAATTCAAATTCCGTACCGTTCATTTGCGAAATATGCACGGAAACTAAAACCACTCACGACGCTTTCTTCATCGGTGGTTGTTCCCATGCTTATTGCTCCGATTGTGTTGCTATGTACGTTGCTTCCAAGCTCGAAGAAAACGTGATCAACGTTCGGTGTCCTGTTTCCGGTTGCAGTGGTTTATTGGAAGCTGAGGATTGCCGTTCGATTCTCCCGGCGGAGGTTTTTGATCGGTGGGGGAAGGCGTCGTGCGAGGCGTTGTTTGATGTTTCGGAGAAATTCTACTGTCCTTTTGCAGACTGTTCTGCGCTTTTGATTAATGATGGGACGGAGACTGTGGAGCAATCGGAGTGTCCGAATTGTGAGAGAATGTTTTGTGCAAAATGTAAGGTTGCATGGCATGAAGGAATCGAATGTAGCGAATTTGAGAAGCTGAATTCGGATGAGAGGGAGAAAGAAGATGTTATGTTGATGCGTCTTGCGAAGGATATGAAATGGAGAAGATGTCCCAATTGTAGGTTTTATGTTGCCAAATCGGAGGGTTGCTTGTACATGAAATGCAGGTGTGGAGTTGCCTTCTGTTACAATTGTGGAGTTCGTTCCACGAATAGCAGCCATTATTGCAGCAATTGTAACCGCTAA 885 0.4508 MSVNTTATTTTRGGAPPSTAEIIDVESFHFSRRTKNNTSISAAIVLSDTEDDDDVRILNFIPKNIPFKKRKRIEKGESSNSNSNSVPFICEICTETKTTHDAFFIGGCSHAYCSDCVAMYVASKLEENVINVRCPVSGCSGLLEAEDCRSILPAEVFDRWGKASCEALFDVSEKFYCPFADCSALLINDGTETVEQSECPNCERMFCAKCKVAWHEGIECSEFEKLNSDEREKEDVMLMRLAKDMKWRRCPNCRFYVAKSEGCLYMKCRCGVAFCYNCGVRSTNSSHYCSNCNR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01305 294 Gene3D - 175 221 - -
Car01g01305 294 Gene3D - 222 294 - -
Car01g01305 294 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 43 269 IPR031127 GO:0004842|GO:0016567
Car01g01305 294 SUPERFAMILY RING/U-box 231 293 - -
Car01g01305 294 ProSiteProfiles TRIAD supradomain profile. 86 294 IPR044066 -
Car01g01305 294 Pfam Zinc finger, C3HC4 type (RING finger) 90 135 IPR018957 GO:0046872
Car01g01305 294 SUPERFAMILY RING/U-box 166 225 - -
Car01g01305 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 172 IPR013083 -
Car01g01305 294 SUPERFAMILY RING/U-box 87 168 - -
Car01g01305 294 SMART ibrneu5 158 220 IPR002867 -
Car01g01305 294 SMART ibrneu5 230 292 IPR002867 -
Car01g01305 294 Pfam IBR domain, a half RING-finger domain 173 220 IPR002867 -
Car01g01305 294 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 43 269 - -
Car01g01305 294 ProSiteProfiles Zinc finger RING-type profile. 90 136 IPR001841 -
Car01g01305 294 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01305 Car-Chr1 18014351 18017074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01305 90 279 C3H Transcription Factor Family AT2G19610 31.343 3.43e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01305 K11975 - gmx:100803898 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01305 01 18014351 18017074 Car01g01305 01 18014351 18017074 ECH