Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01304 ATGGGAAACAAGGTTAGCATGCTTCATTGTGTCCCTATAAAGACAAAAAGAAAAACAAAAGGACAAATCCTCACAATTCCTACATTATCTTCCCTCTCTAATTTAAGGCTAGACAATTCTATTGAAGCCAATGAAACTACTATTGCCACCCCTCTTCCCCTACAAGAAACCCCATTTTATGATTGTCAAATTTGTTATGAATCAAAGCCTCCCAATTTCATTTTCAACATAGAGGGTTGCACTCATTTTTATTGCACACAATGCACTATGCAATACATAGTGTCAAAACTTGACGCCAACCAAATCAACATTTTTTGTCCTGAACCAGGATGTTCTGCAGTATTGAATCCTCGTAATTGCAAACCAATTCTACCAAACAATTTGTTGAATTGGTGGGAAAAAGCTTTGATTGAATCAATGATACCTGAAAAGAACAAATTTTACTGTCCATATCATGATTGTTCTACACTTTTAATATTGAGTGAGGCCCATGATAATAATAATGACCAAGAAGCAGGGGTGGGGATAATTAAAAATACACAATGTGTGTGTCCACTTTGCAAGAGAAAAGTTTGTGTTAATTGTAAAAGTCCTTGGCATGTTGATATGACTTGTACTAAGTTTCAAAAAATGAAACGTAGTAATCATGATGATTTGATGTTGGATCTTGTTAAGAAAAAGAACTGGAGAAAGTGTCCAAATTGTGGCCGTATTATTGAAAAGACTCATGGTTGCGGGCATATGCAATGCTGTTTTAGTTTGTTTTGA 768 0.3516 MGNKVSMLHCVPIKTKRKTKGQILTIPTLSSLSNLRLDNSIEANETTIATPLPLQETPFYDCQICYESKPPNFIFNIEGCTHFYCTQCTMQYIVSKLDANQINIFCPEPGCSAVLNPRNCKPILPNNLLNWWEKALIESMIPEKNKFYCPYHDCSTLLILSEAHDNNNDQEAGVGIIKNTQCVCPLCKRKVCVNCKSPWHVDMTCTKFQKMKRSNHDDLMLDLVKKKNWRKCPNCGRIIEKTHGCGHMQCCFSLF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01304 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 141 IPR013083 -
Car01g01304 255 ProSiteProfiles TRIAD supradomain profile. 58 255 IPR044066 -
Car01g01304 255 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 50 252 - -
Car01g01304 255 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 50 252 IPR031127 GO:0004842|GO:0016567
Car01g01304 255 Pfam IBR domain, a half RING-finger domain 135 205 IPR002867 -
Car01g01304 255 Gene3D - 203 252 - -
Car01g01304 255 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Car01g01304 255 SMART ibrneu5 130 205 IPR002867 -
Car01g01304 255 SUPERFAMILY RING/U-box 57 143 - -
Car01g01304 255 SUPERFAMILY RING/U-box 216 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01304 Car-Chr1 18004062 18005703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01304 56 250 C3H Transcription Factor Family AT2G19610 28.218 1.59e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01304 K11975 - rcu:8259039 206.453