Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01294 ATGGAAAAGAGAACAGAAAGCGCAACTCCACTTTGGCGTAAAGGACCAGATGAGAAGCCAGTGTTGTGTAATGCTTGTGGATCACGTTACAAGGTGAAAGGAACCCTTGAAAACTATCTCCCAAAAAATGCTCAACCTCACTCATACCTTAAACATCAAAAAGAATATAATCAATTTCTCAAGCCTTCAAACTCACCTGCAGGTGGGATAAATACAAATTTATGGAGCACTAAAATCCCTTCAAAGAAACGTTCTCCGGTAAAGAGAGTGCCACCAATGGAGAAATTTCACAAGCAGCTTCTTAGATTGTGGGAAAGTGAAAAACAACACAATGACTCCTCTCTAGATAACATTTTGCTGTTTGAAAATATCAACAATTTCATACCCAAAAATGAGATAGGCATTGGATGCATTCTTCTAAAGAATGATGTTATTTCTAAAGATTAA 447 0.3714 MEKRTESATPLWRKGPDEKPVLCNACGSRYKVKGTLENYLPKNAQPHSYLKHQKEYNQFLKPSNSPAGGINTNLWSTKIPSKKRSPVKRVPPMEKFHKQLLRLWESEKQHNDSSLDNILLFENINNFIPKNEIGIGCILLKNDVISKD 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01294 148 Pfam GATA zinc finger 7 35 IPR000679 GO:0006355|GO:0043565
Car01g01294 148 CDD ZnF_GATA 9 35 IPR000679 GO:0006355|GO:0043565
Car01g01294 148 PANTHER OSJNBB0038F03.10 PROTEIN 8 147 IPR044589 -
Car01g01294 148 PANTHER GATA ZINC FINGER PROTEIN 8 147 - -
Car01g01294 148 Gene3D - 4 90 IPR013088 GO:0006355|GO:0008270
Car01g01294 148 SMART GATA_3 3 54 IPR000679 GO:0006355|GO:0043565
Car01g01294 148 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 53 - -
Car01g01294 148 ProSiteProfiles GATA-type zinc finger domain profile. 7 34 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01294 Car-Chr1 17656785 17657845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01294 9 46 C2C2-Gata Transcription Factor Family AT4G17570 71.053 1.71e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car01g01294 GATA 2.4e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01294 - - cam:101490431 247.669