Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01286 ATGGCGACGACGAAGAAAAACAGAACCCAAGTGACGAAAAACAAAGAGAGTGAAAAGAAACCAAAACTTACTGGTGATGGAACCAAGAAAGAAATCAAAGAAGAAAATAGCGTTTTTGCTGCTTGTTCCTTCACTAGCCTTGGTCTTCACCCTACCTTATGTGAGCAACTTCGTGAAAGGATGGGGTTTGAAGGTCCAACATTAGTTCAAGCTCAAGCCATTCCTGTTGTTCTCTCTGGCCGTCATGCACTGGTTAATGCTGCTACGGGCACAGGGAAGACTATTGCATACCTGGCTCCAATAGTTCATCATTTGCAGGGTTATGATAAGCGAATTGAACGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGCGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAATTATTGCACCGATTTCATTGGATTGTTCCTGGATACATAATGGGTGGTGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACTCCTGGGCGCCTTTTGGATCACTTGAAGAATACATCATCATTCTTGTATACAAATTTGCGTTGGATAATTTTTGATGAAGCTGATCGTATTTTGGAATTAGGGTTTGGAAAAGAGATACAAGAAATACTAGATCTTTTAGGTTCCACGAAGACAGGGCTCGGCGACCAAGAAAACACAGTTCCAAGACCCTCTAAAAGTCAAAGACAGAACCTTCTTTTATCAGCCACTTTAAATGAGAAAGTAAATCACCTTGCAAAAATTAGCTTAGAGGATCCAGTAATGATTGGTATTGATGATGAAATAATGCTACCAACGTCAAAAATTAGATTTGATCATTCAGATTCTGACGAAGACAATGAAGACAAACATTCCAATAAAATACCAGCAGTTGGAGCTTATAAAGTTCCGGTACAGTTAATTCAGAGATACTTGAAAGTGCCTTGCGGATCACGGCTTGCTGTACTTCTTTCAGTTCTTAAGAATCTTTTTGAAAGGGATCCTTCACAGAAGGTTGTGCTATTCTTTTCAACATGTGATGCAGTGGATTTCCACTATTCACTTTTAAGCGAATTCCATTTCTCGTCCTCTCCACAAACCGAAGAAGGGAACAGACCGAAGTTTCTTGGATGCAAAACTCTTCGGCTACACGGTAATATGGAACAGGAGGACAGGACAAACAGTTTTCAGGCCTTTAAAACTGACAAATCTGCCCTTCTTTTGTCTACCGATGTTTCTGCCAGAGGCCTTGATTTTCCAAAGGTTAGGTGCATCATACAATATGATTCTCCCGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGACTTGGCGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAGCTGAAATAGACTATTTACAAGACTTGGAGAAACATGGTGTCTCACTAACAGAATATCCTCTCTCCAAAGTTTTAGATAGTTTTCCAATTTCTGGAAACAAGAACGTAAAGAAATCTGTTTTCATAGACTTACATCCCTGGATCCTTTGTCTCCAGAAGGCGCTTGAGTCGTTCATCGCGTCGAAGCCGAAGATCAATGAACTTGCCAAGAGAGCATTTTGCTCTTGGGTCCGTGCATACACCGCACATCGTGGAGATCTGAAAAGAATATTTATGGTCAAGAAACTTCATTTGGGGCATGTAGCGAAAAGCTTTGCATTGAAACAACAGCCCTCCTTAGTCGGAAAGTCATTCCAAAACCAAACTAAAAAGAGAAAGAGATTTGAGAAGAAAAATGGGATGTCGAATAAGAGAAGAGTTGCACGTGTGACTTAA 1833 0.4081 MATTKKNRTQVTKNKESEKKPKLTGDGTKKEIKEENSVFAACSFTSLGLHPTLCEQLRERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIVHHLQGYDKRIERSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIQEILDLLGSTKTGLGDQENTVPRPSKSQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDEIMLPTSKIRFDHSDSDEDNEDKHSNKIPAVGAYKVPVQLIQRYLKVPCGSRLAVLLSVLKNLFERDPSQKVVLFFSTCDAVDFHYSLLSEFHFSSSPQTEEGNRPKFLGCKTLRLHGNMEQEDRTNSFQAFKTDKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLEKHGVSLTEYPLSKVLDSFPISGNKNVKKSVFIDLHPWILCLQKALESFIASKPKINELAKRAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKQQPSLVGKSFQNQTKKRKRFEKKNGMSNKRRVARVT 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01286 610 CDD DEADc_DDX31 53 271 - -
Car01g01286 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 502 IPR001650 -
Car01g01286 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 270 IPR014001 -
Car01g01286 610 Gene3D - 1 273 IPR027417 -
Car01g01286 610 SMART helicmild6 357 455 IPR001650 -
Car01g01286 610 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 25 608 - -
Car01g01286 610 MobiDBLite consensus disorder prediction 584 610 - -
Car01g01286 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 471 IPR027417 -
Car01g01286 610 Gene3D - 324 606 IPR027417 -
Car01g01286 610 CDD SF2_C_DEAD 314 464 - -
Car01g01286 610 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Car01g01286 610 Pfam Domain of unknown function (DUF4217) 518 578 IPR025313 -
Car01g01286 610 Pfam DEAD/DEAH box helicase 68 258 IPR011545 GO:0003676|GO:0005524
Car01g01286 610 PANTHER RNA HELICASE 25 608 - -
Car01g01286 610 SMART ultradead3 62 284 IPR014001 -
Car01g01286 610 MobiDBLite consensus disorder prediction 9 29 - -
Car01g01286 610 Pfam Helicase conserved C-terminal domain 332 455 IPR001650 -
Car01g01286 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 271 IPR027417 -
Car01g01286 610 SMART DUF4217_3 516 581 IPR025313 -
Car01g01286 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 42 71 IPR014014 GO:0003724
Car01g01286 610 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01286 Car-Chr1 17329036 17336487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01286 43 488 Eukaryotic Initiation Factors Gene Family AT3G19760 25.167 7.06e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01286 K14806 - gmx:100805157 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01286 01 17329036 17336487 Car01g01286 01 17329036 17336487 ECH