Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01285 ATGAAGGCTCCTTCTAATGGTTACTTGCCTAATTCTGGTGAAGGCGAAAGGAAGACCATCAATACTGAGTTATGGCATGCTTGTGCCGGACCATTGGTCTCTATGCCTCCTGTTGGAAGTCTTGTTGTTTACTTTCCTCAAGGACACAGTGAACAAGTTGCAGCATCCATGCAAAAGGAGGCGGATTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCCGACCCTGAAACTGACGAGGTCTATGCACAAATGACCCTCCAACCTGTAAATAAATATGACAAGGAAGCAATGCTGGCTTCAGACATGGGTCTCAAACAAAACCAACAACCTACTGAATTCTTTTGCAAAACTCTGACAGCTAGTGACACTAGCACTCACGGGGGATTTTCAGTGCCTCGTAGAGCTGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCGCCAGCTCAGGAAATAGTTGCCAAAGATTTGCATGACGCCACATGGACGTTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGCGTCTTTGTTAGTACAAAGAGACTCTTTGCTGGAGATTCGGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGAATAAAGAGATCTAGTCGACAGCAACCAGCACTATCTTCGTCAGTAATATCCAGTGACAGCATGCATATTGGAATTCTTGCTGCCGCGGCTCATGCTGCTTCGAATAACAGTCCATTTACTATATTTTATAATCCGAGGACCAGCCCCTGTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCACTGTACACTCATGTTTCGCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCTGGAGTACGCAGATATATGGGCACAATCACTGGTATCAGTGACTTGGATCCAGTTAGATGGAAAAATTCGCAATGGCGAAATCTTCAGGTTGGATGGGATGAATCAACAGCAGGCGAGCGCCCAAGCAGAGTTTCTATTTGGGAGATTGAACCAGTTGTAACTCCTTTCTATATTTGCCCACCTCCATTTTTTAGGCCGAAGTTCCCGAAGCAACCGGGAATGCCAGAAGATGAGTCTGAAATAGAAAATGCTTTCAAGAGAGCTATGCCGTGGCTTGGAGATGAACTTGGCATGAAGGATGCATCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAACAGAACAATAATCAGTTTTCTTCTCCTCAGTCAGGGCTTTTACCTCCATCAATGCTTTCGTCAAATTCACTGCACGGCAACCTAAACACTGATGATCCATCGAAGATATTGAACTTTCAAGCTCCAAGTCTTCAATTTAACAAACCTAATTTACCAAATCAAGTCAATCAATTGCAACATTCGCCGAACTCATGGTCTcagcaacagcaacagcaacagaggctgcagtcgttgttacaaacgccgctaaaccagctgcagcaacaacagcagcagcagcagaggcaacagcagctgcctggaatgcaaaaccttccgcagccacagcaacagccccaacagactcaacagaatgcgcagcagcctcaacaacagcaacagcatcaacaacaacaacaacagcCGAGTCAAAATGCGAATATGAATAACGGGACAGTTGCTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACCAGTAACCTACTCGCAGCTTCAGCAACAGTTACTCTCGACAAGTATCCCGACCCAACAAAATTTTCAGTCAGTTAGCAAGAGTCCATTGCTGATGACATCGTTACCGCAAGACTCACAATTTCAGCAACAGATGGACCAACAAGCTAGCCTCTTACAGAGGCAGCAGCAGCAACAACAGAATCAGTTGCAACAATCTTCGTTACATTTATTGCAACAAAGCCTATTGCAAAGGGCGCCGCAGCAACCACAAATGAATCAAATTTCACAGCAAAACATCTCAGAACAGCAACAACCACAGATGCAGTTGCTGCAGAAGTTGcaacaacaacaacagcagcagcagcaacaacagcagcaacCGCTTTCCACGTCTTGTGCGCTTTTGCAGTCTCAGCTTATGCAGCAGCAAAATACTCACCAGCAATTGCCGCAGCTGCCTCTGTCGCAGCATCAGCCTCAACAGCTTGGCAACAACGCATTGTCAATGGAGAAGCTTCTGAACAACAATTACTCTTCCCCAGGTCTCATGCATCCACAGCAGCTTCCTGTGAACCATCCGCAGAATACACAAAAATCACCAACTAATACTCGAGCTCCCTCTGCTTTCACCGATGGAGATGCCCCGTCTTGCTCAACTTCTCCGTCTACTAATAACTGTCAAACATCGCCTCCAAACCTCCTGAAAAGAAATCAACCAGACACATTTGGAGGGCCTTCGATAGTCGAAACCACCAATAATCTTATGCAGGAGCATCAAAGCAAGTCTGACACGCAGATCAAACACGAATTGCACAGTGTAAAAGGACCTGACAAGCAAAAGTACAAAGGGGCAATCAATGATCAAATGGAAGCTTCTTCTGGAACATCGTACGGTATTGATCCTGGTAACATCCACCAGAACTTCCCACTTTCCAACTTCTACATGGATGGTGATGTCCACTCACAACCGAGAAATAATTTACCGTTTTGCCCCAATATTGACGGGTTAACACCCGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGTGGTGCTCCTAGAGACATTGAAATTGAAACTGAGTTGTCCACTGCTGCCATTAGTTCGCAGTCGTTTGGGGTTCCGAACATGTCTTTTAAGCCAGGGTGCTCAAATGATATTGCCATCCCTGATACAGGGGTTTTGAATAATGGCTTATGGTCTAATCAGACTCAACGAATGCGAACATATACTAAGGTGCAAAAATGCGGTTCAGTCGGAAGATGCATTGATGTGACCCGTTACAAGGGATATGACGAACTCCGCAATGATTTGGCTCGTATGTTCGGGATTGAAGGGCTGCTAGAAGATCCACTAAGGACTGACTGGAAACTAGTATACGTAGATCACGAAAATGACATCCTTCTTGTTGGCGACGACCCTTGGGAAGAATTCGTAAACTGTGTTCAAAGCATAAAAATACTATCGTCCGCCGAGGTACAACAAATGAGCTTAGAAGGGGACTTAGGTCATGTTCCAATCTCCAATCAAGCTTGTAGTGGAACAGAAAGTGGCAATGCATGGAGAGCACAGTATGATGATAACTCGGCAGCCTCGTTTAATCGATAA 3363 0.4095 MKAPSNGYLPNSGEGERKTINTELWHACAGPLVSMPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDATWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNQFSSPQSGLLPPSMLSSNSLHGNLNTDDPSKILNFQAPSLQFNKPNLPNQVNQLQHSPNSWSQQQQQQQRLQSLLQTPLNQLQQQQQQQQRQQQLPGMQNLPQPQQQPQQTQQNAQQPQQQQQHQQQQQQPSQNANMNNGTVASNQIPNQCVQQPVTYSQLQQQLLSTSIPTQQNFQSVSKSPLLMTSLPQDSQFQQQMDQQASLLQRQQQQQQNQLQQSSLHLLQQSLLQRAPQQPQMNQISQQNISEQQQPQMQLLQKLQQQQQQQQQQQQQPLSTSCALLQSQLMQQQNTHQQLPQLPLSQHQPQQLGNNALSMEKLLNNNYSSPGLMHPQQLPVNHPQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNLLKRNQPDTFGGPSIVETTNNLMQEHQSKSDTQIKHELHSVKGPDKQKYKGAINDQMEASSGTSYGIDPGNIHQNFPLSNFYMDGDVHSQPRNNLPFCPNIDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIEIETELSTAAISSQSFGVPNMSFKPGCSNDIAIPDTGVLNNGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRNDLARMFGIEGLLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGHVPISNQACSGTESGNAWRAQYDDNSAASFNR 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01285 1120 SMART B3_2 126 228 IPR003340 GO:0003677
Car01g01285 1120 Pfam AUX/IAA family 991 1079 IPR033389 -
Car01g01285 1120 Coils Coil 681 701 - -
Car01g01285 1120 CDD B3_DNA 125 217 IPR003340 GO:0003677
Car01g01285 1120 MobiDBLite consensus disorder prediction 750 822 - -
Car01g01285 1120 SUPERFAMILY CAD & PB1 domains 1006 1071 - -
Car01g01285 1120 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Car01g01285 1120 Gene3D - 988 1082 - -
Car01g01285 1120 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car01g01285 1120 Gene3D - 289 360 - -
Car01g01285 1120 ProSiteProfiles PB1 domain profile. 993 1077 IPR000270 GO:0005515
Car01g01285 1120 Gene3D - 123 227 IPR015300 -
Car01g01285 1120 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Car01g01285 1120 Coils Coil 623 643 - -
Car01g01285 1120 MobiDBLite consensus disorder prediction 427 571 - -
Car01g01285 1120 MobiDBLite consensus disorder prediction 750 811 - -
Car01g01285 1120 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Car01g01285 1120 PANTHER AUXIN RESPONSE FACTOR 19 1 1107 - -
Car01g01285 1120 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1107 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01285 Car-Chr1 17261722 17269719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01285 1 480 B3 DNA Binding Superfamily AT1G19220 82.062 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car01g01285 AUX_IAA 1.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01285 K14486 - gmx:100804628 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01285 01 17261722 17269719 Car01g01285 01 17261722 17269719 ECH
Car07g00390 07 3409921 3417100 Car01g01285 01 17261722 17269719 PCT