Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01284 ATGGCTACCTCTCAGTTGACAGCATCATTAATTTCTACGAGGAACGTGTCATCATTTCAAGGACTTAGACCTTCTGGAGTTCAGTTTCATTTTGCACGAAATGTCAGAATTGCTAATCCTGCACGAAGCTCCTTCAAGGCTCTGATTGTCAAGGCCGCCACTGTCGTTGCCCCCAAGTACACCGCAATCAAGCCTCTGGGTGACAGGGTACTTGTAAAAGTGAAGGAAGCAGAAGAGAAGACAGAGGGTGGAATTTTGCTTCCCTCAAATGCTCAATCGAAGCCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGAAAGTCAATTGGGAAGAACCAAGTTGAAATTAGTGTGAAGCCGGGTGCACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGATTTCAATGGCGAAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGATATAAAGGATCTTAAACCCTTGAACGATAGAGTCCTGATAAAGATTGAAAAAGCCGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAACCTTCATTTGGAACAGTGGTAGCAGTTGGTCCCGGGACTCTGGATGAAGAAGGCAATATAAAACCTTTGTCTGTTACTCCTGGAAACACAGTTTTGTACTCCAAATACGCCGGTAACGACTTCAAGGGCAAAGATGGTTTTGAGTACATCACCTTGAGAAGTTCAGATGTCATTGCTGTACTCTCTTAG 765 0.4392 MATSQLTASLISTRNVSSFQGLRPSGVQFHFARNVRIANPARSSFKALIVKAATVVAPKYTAIKPLGDRVLVKVKEAEEKTEGGILLPSNAQSKPQGGEVVAVGEGKSIGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGTLDEEGNIKPLSVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVIAVLS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01284 254 CDD cpn10 63 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 SUPERFAMILY GroES-like 160 253 IPR011032 -
Car01g01284 254 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Car01g01284 254 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Car01g01284 254 Gene3D GroES chaperonin 156 254 IPR037124 GO:0006457
Car01g01284 254 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Car01g01284 254 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 PANTHER GROES CHAPERONIN 1 254 - -
Car01g01284 254 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car01g01284 254 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Car01g01284 254 SUPERFAMILY GroES-like 61 154 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01284 Car-Chr1 17253610 17256976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01284 1 254 Calmodulin-binding Proteins AT5G20720 70.703 1.33e-128 362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01284 01 17253610 17256976 Car01g01284 01 17253610 17256976 ECH
Car07g00389 07 3406789 3409703 Car01g01284 01 17253610 17256976 PCT