Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01278 ATGGTGAAAATGAATGTTGAAAAAACTGCCGAGGAAAGAAGTGATTCGTTGTACAGAGGAGTAAGGAAGAGGAAGTGGGGAAAATGGGTGTCGGAAATCAGACTACCAAACAGCCGCCAAAGAATATGGTTAGGTTCTTATGATTCTGCTGTTAAAGCCGCGCGTGCATTTGACGCGGCTATGTTTTGCTTACGTGGCAGTGGCGCTAAGTTTAATTTCCCTGATGATCCGCCGGATATTGCGGGAGGGAGGTCTATGACACCTTCTCAGATTCAAGCTGCTGCTGCCCGTTTTGCCAATTCGGAGCATCCGAAAGAGTATTCTGGTCGACCCGATAATAATGCCATGGAGTCTTCGTGTTCGTCGGAAGTTACTGCATTGTTGCCTATGGAATCGCCGTCTCCGGCTTTATCCGATGCGACGGTTCAGATGGACGGTGAATTTGCGCAAACCGGGTTATTTTCGGAGTTGTTTTCGGTTAATGGGTCGGGTATTTGTGGACCCGATTACTCTAATTTTATGGGTTTTGATGATTTTGGCGGCGATTTCTATGTGCCGGAGCTTCCAAATTATGATTATGGAGAAGAGAATATGGATGGGTTGATAATTAACGATTCCTTCTTGTGGAATTTCGGAGAATGA 642 0.4579 MVKMNVEKTAEERSDSLYRGVRKRKWGKWVSEIRLPNSRQRIWLGSYDSAVKAARAFDAAMFCLRGSGAKFNFPDDPPDIAGGRSMTPSQIQAAAARFANSEHPKEYSGRPDNNAMESSCSSEVTALLPMESPSPALSDATVQMDGEFAQTGLFSELFSVNGSGICGPDYSNFMGFDDFGGDFYVPELPNYDYGEENMDGLIINDSFLWNFGE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01278 213 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Car01g01278 213 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 4 211 - -
Car01g01278 213 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Car01g01278 213 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Car01g01278 213 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Car01g01278 213 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Car01g01278 213 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Car01g01278 213 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Car01g01278 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 211 - -
Car01g01278 213 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01278 Car-Chr1 17068407 17069478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01278 16 211 AP2-EREBP Transcription Factor Family AT1G19210 46.269 2.08e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g01278 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01278 - - mtr:MTR_2g043040 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01278 01 17068407 17069478 Car01g01278 01 17068407 17069478 ECH