Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01276 ATGGTGAAATCGAATGTTGAAAAAACTGCGGCGGAAAGAAGCGATTCATCGTACAGAGGAATAAGGAAGAGGAAGTGGGGAAAATGGGTGTCGGAAATCAGATTACCAAACAGCCGCCAAAGAATATGGTTAGGTTCTTATGACTCTGCTGTAAAAGCGGCGCGTGCATTTGACGCGGCTACGTTTTGCTTACGTGGCGGTGGTGCTAAGTTTAATTTCCCGGATGATCCGCCGGATATTGCGGGAGGTAGGTCTATGACACCTTCTCAGATTCAGGATGCTGCAGCCCGTTTTGCCAATTCGGTTCGACCCGTTAACACTCCGATTGAAACTCCGTCTTCGTCGGTGAGGACAACATTGTTGCCAATGGAATCACCGTCTCCGGCACTCTCCGATGGGACATTTCAGACGGACAGCGGCGTCGCAGAAAATGGGTGTTTTAAAGAAATGGTATCGGTAAATGGATCGGGTTATTGTGTACCAGATTACTCTATTTTTCCGGGTTTTGATTATTTTGGTGGTGATTTCTATGTGCCGGAGTTGCCAAGTTATGATTATGGAGATGAGAATATTGATGGTTTGATAATTCATAACTCTTTCTTGTGGAATTTCTAA 615 0.4537 MVKSNVEKTAAERSDSSYRGIRKRKWGKWVSEIRLPNSRQRIWLGSYDSAVKAARAFDAATFCLRGGGAKFNFPDDPPDIAGGRSMTPSQIQDAAARFANSVRPVNTPIETPSSSVRTTLLPMESPSPALSDGTFQTDSGVAENGCFKEMVSVNGSGYCVPDYSIFPGFDYFGGDFYVPELPSYDYGDENIDGLIIHNSFLWNF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01276 204 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Car01g01276 204 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Car01g01276 204 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Car01g01276 204 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Car01g01276 204 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Car01g01276 204 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Car01g01276 204 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Car01g01276 204 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 204 - -
Car01g01276 204 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Car01g01276 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01276 Car-Chr1 17042945 17043986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01276 16 204 AP2-EREBP Transcription Factor Family AT1G19210 48.969 2.17e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g01276 AP2 9.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01276 - - mtr:MTR_2g043040 254.988