Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01272 ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTGCAAACAGAGAAATATGTCAAAAGGTTTTCACACAAGGAACAGCAACAACATCATGGTTAAGCAGAAGAAGAAGCATTACAATTAGAAATGCAACAAAAGGAGTGTCAGATGTATGTGAGCCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGTCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGGTCTGATCCAGAGTTACTTAAATGGTTTGCACAAGCAGAGCTAATGCATTCAAGATGGGCAATGTTAGGAGTATCAGGAATTCTAGTACCAGAGCTACTTCAAAACATTGGTTATGTTGAAAACTTCTCTTGGTTCAATGCTGGTTCTGTTGAATACTTTACAGATCCAACAACCCTATTCATTGTGCAACTAGCTTTAATGGGCTGGGTTGAAGGTAGAAGATGGGCTGATATAGTTAACCCAGGGAGTGTTGACATTGAGCCCAAGTTACCAAATAGGCCCAATCCAAAGCCTGATGTTGGTTATCCAGGTGGGTTGTGGTTTGATCCAATGAGATGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTGTTGGGTTTTGTTTTCAAGCTATTTACACCGGGAATAGTCCTATTGAAAATTTGATGGCTCACCTTGCTGATCCTGGTCACTGCAACATTTTCTCGGCTTTCACTTCAAGGTAG 795 0.4214 MALAISSTSLSSFANREICQKVFTQGTATTSWLSRRRSITIRNATKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLGVSGILVPELLQNIGYVENFSWFNAGSVEYFTDPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMRWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGNSPIENLMAHLADPGHCNIFSAFTSR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01272 264 SUPERFAMILY Chlorophyll a-b binding protein 58 263 - -
Car01g01272 264 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 261 - -
Car01g01272 264 Pfam Chlorophyll A-B binding protein 68 234 IPR022796 -
Car01g01272 264 Gene3D Chlorophyll a/b binding protein domain 69 254 - -
Car01g01272 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 261 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01272 Car-Chr1 16800132 16803506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01272 57 264 Chloroplast and Mitochondria Gene Families AT3G61470 67.788 2.72e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01272 K08908 - gmx:100800374 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01272 01 16800132 16803506 Car01g01272 01 16800132 16803506 ECH