Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01258 atgATAGCAAACTCCTCAACGATTTATATTGTTTGCGAATTGGAACTCCAAAGCAAAAAACCCGCGAACACCTTTGCTCTTGCAGTGTCTACTGCGCAAAACGCGAAACCAATCGATCAAAAGGTCAGAATCAAAATGCAGAAGAAATCGCCGTTACCGTTGAAAGACGCCATGGGGAACAAGAAGAATGTGCAATTGTGTAGCAAGGAATCGCTAGTGAAGCTTCTTAGATGGCATTTTGGTTACTCTGATTTTAGGGGTATGCAATTGGAAGCTATTCAAGCTGTACTCTCAGGAAGGGATTGTTTTTGCCTTATGCCAACTGGAGGAGGCAAGTCAATGTGTTATCAGATTCCTGCATTGGCAAAAGCAGGAATCGTGCTTGTAGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTGATGGCACTAAAGGAGAAAGGAATCGCTGCAGAGTTTCTCTCCTCAACAAAAACGGCAGTTGCAAAAGATAAGATTTACGAGGACCTTGATTCTGGAAAACCGTCTACAAGGCTGCTTTATGTGACTCCAGAGTTGATAGCAACCCCAGGGTTTATGTCAAAGCTGGCAAAGATTTATTCCAGGGGTTTGTTAAGTCTCATTGCCATAGACGAGGCACATTGCATCTCTAGTTGGGGTCACGATTTCAGACCTAGCTACCGTAAGCTTTCAACTCTGAGAAAGCACCTGCCAGATGTACCAATGTTAGCTCTGACTGCTACTGCTGTTCCTAAGGTTCAGAAGGATGTAGTGGAATCCTTACAGATGCAAAATGCATTAAAACTGAAGACTTCTTTTAATCGGCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGAATGATGCTTATGCTGATTTATCTGATACTCTCAAATCTTTGGGAGATGTCTGTGGGATAATTTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAGCTCATCTATCCCAAAGAGGCTTTTCTTGTGCTGCTTATCATGCAGGACTGAATGATAAAATGCGAACTTCAGTGCTACATGATTGGATTTCTTCAAACATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGATAGAAAAGATGTCAGAATCGTGTGCCACTTCAATATTCCAAAGTCAATGGAATCATTCTATCAAGAGTCAGGAAGAGCTGGTCGTGATCAATTGCCCTCTACAAGTCTGTTGTACTATGGAGTAGATGATCGCAAAAGAATGGAATTTATATTAAGAAACTCAGGGAGCAAGAAGTCACAATCCTCAAGTTCAAAAGAAGAATCATCCAGAACGTCCCTAACTGCTTTCAATCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAATGATTATCGAAAGTTTTGGGGAGCAGGTAACAGCATCACTATGTGGAAAAACGTGTGACTCATGTAGACACCCAAACATAGTTGCCAGAAATTTGGAGGATCTCACAGCTGCCTGTGCTCTACGCCAGCAAAGCGGTTCTCGAGTTTTCATAGCCAGTTCCACTGGTGCAATTGATGGAGAACAGTTATCTGAATTCTGGAATCGAGATGACGAAGCGAGTGGATCAGAGGAAGATATTTCTGACTTAGATGGGGACGATAATGAGGCTGTCAACAATCTAGGCCGGTCAAAGTTTCAATCCAGACTGGGAGTAAATGAAAAGCTTGATTTGTTACAGCGGGCAGAAGAAAACTACTATCGTAAAGAGAACACTAATAGACAGAGCAACAAAGTTGACAAGAATGCTATTTCTGATGAAATGCGAGGGGCAAGCAGGCAGAGATTACAAAATGCTTTAAAACAGGCTCAGCAACGGCTTGACAACTTAAAGATTGAAATGGAAACATCAGCATCTCTTCTTGAAGATGAATGCTACAAGAAATATGGCAAGGCTGGGAAATCATTCTATTATTCACAAGTGGCAAGTACTATCAGGTGGCTGACAACTACAAGTTCTATCAATCTGATGAACCGACTTTGTGCAATTAATCCTTCCACATCAGTGAATGTCTTCTCTGAAGCTGAACATCCCCTCACATCGCCACCTGCTTCAGATCCTTGTGCAAAAGAAGAAACTACCAATGAGCTCTCAGGCAATGCTATAACAGAAACTATCCCATGTGATGTGCCATTGGAAAGTTCTAATACAAACTTGCCACCAATACCATCCTTCTCTGAATTTGTAAATAGTAGGAAAGCAAAAAGAAACCAATCAAGTGATACCAACAAACACTCATCAAGAGTAGAGAAGAAGATGAGGATACAGTAG 2310 0.4108 MIANSSTIYIVCELELQSKKPANTFALAVSTAQNAKPIDQKVRIKMQKKSPLPLKDAMGNKKNVQLCSKESLVKLLRWHFGYSDFRGMQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKAGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTAVAKDKIYEDLDSGKPSTRLLYVTPELIATPGFMSKLAKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSTLRKHLPDVPMLALTATAVPKVQKDVVESLQMQNALKLKTSFNRPNIYYEVRYKDLLNDAYADLSDTLKSLGDVCGIIYCLERSMCDDLSAHLSQRGFSCAAYHAGLNDKMRTSVLHDWISSNIKVVVATVAFGMGIDRKDVRIVCHFNIPKSMESFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILRNSGSKKSQSSSSKEESSRTSLTAFNQMVEYCEGSGCRRKMIIESFGEQVTASLCGKTCDSCRHPNIVARNLEDLTAACALRQQSGSRVFIASSTGAIDGEQLSEFWNRDDEASGSEEDISDLDGDDNEAVNNLGRSKFQSRLGVNEKLDLLQRAEENYYRKENTNRQSNKVDKNAISDEMRGASRQRLQNALKQAQQRLDNLKIEMETSASLLEDECYKKYGKAGKSFYYSQVASTIRWLTTTSSINLMNRLCAINPSTSVNVFSEAEHPLTSPPASDPCAKEETTNELSGNAITETIPCDVPLESSNTNLPPIPSFSEFVNSRKAKRNQSSDTNKHSSRVEKKMRIQ 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01258 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 420 IPR027417 -
Car01g01258 769 SMART helicmild6 318 399 IPR001650 -
Car01g01258 769 Pfam DEAD/DEAH box helicase 88 254 IPR011545 GO:0003676|GO:0005524
Car01g01258 769 PANTHER DNA HELICASE RECQ FAMILY MEMBER 49 753 - -
Car01g01258 769 CDD DEXHc_RecQ 74 274 - -
Car01g01258 769 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 75 493 IPR004589 GO:0004386|GO:0006310
Car01g01258 769 MobiDBLite consensus disorder prediction 722 749 - -
Car01g01258 769 CDD SF2_C_RecQ 275 408 - -
Car01g01258 769 Pfam Helicase conserved C-terminal domain 306 397 IPR001650 -
Car01g01258 769 Pfam RecQ zinc-binding 412 483 IPR032284 -
Car01g01258 769 Gene3D - 45 274 IPR027417 -
Car01g01258 769 Gene3D - 275 501 IPR027417 -
Car01g01258 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 439 IPR001650 -
Car01g01258 769 SMART ultradead3 81 283 IPR014001 -
Car01g01258 769 MobiDBLite consensus disorder prediction 688 769 - -
Car01g01258 769 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 49 753 - -
Car01g01258 769 MobiDBLite consensus disorder prediction 529 551 - -
Car01g01258 769 MobiDBLite consensus disorder prediction 750 769 - -
Car01g01258 769 Coils Coil 606 633 - -
Car01g01258 769 MobiDBLite consensus disorder prediction 700 715 - -
Car01g01258 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 267 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01258 Car-Chr1 15763325 15775221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01258 78 422 Eukaryotic Initiation Factors Gene Family AT3G19760 20.891 5.63e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01258 - K10901 gmx:100819601 1150.58