Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01241 ATGAACAAGAATAGGTTCCCATTTACACCATCACAATGGCAAGAACTTGAACATCAAGCTCTTGTTTACAAGTACATGGCTTCTGGTATCTCTATTCCACCTGATCTTCTTTTCACTATTAGAAGAAGCTTTTTCGATTCTCCTCTCATCTCTTCAACTCTTTTGCCTAACCAAACACAACAACAACATTTTGGATGGAACTATCTTCAAATGGGTATAGGAAGAAAAATAGATCCTGAACCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGCTCAAAAGAAGCATATCAAGATTCTAAATACTGTGAAAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTCAAAACAACAACAAcaaatgcaaatgcaaatgcaaatgcaaatgcaaatAATCCTTCAACTCTTACATCTAATAATTCTTCTTTGTCCTTTGATACAcaacaacaccatcatcattctcatttgcaacattcctttctttatcatcatccatcatcaaagtcctcatcatcaACTGCTATTGTTTTGTCATCATATGAAGATAATAGTGCTCCCTTGTTTCTTGATACTAATTCTTGCTCTCATAATAACACAGATTACAGGAACAGGTATGTGTATGGAGAGAAAGAAGATGTAGATGAGTATGCTTTCTTCAAAGAACCTTCTGGAAGTAGTACTATGAAAAGCTTCTCTACTTCTTCTATGGATCGTGATTCTTGGCAACTAACACCACTCACTATGAGttcttcatcttcttcgtcgtcttcGAGACTGAGGAGTTTTTCTTCTTTGTCCAATGATTACTCTTGCTTGCAACTTCAGAGTCTCAGTgaacaatcaaaacagcaagaacaagaaaaagaacCTCAGAAAACTGTCCATAGATTCTTTGATGAATGGCCACACAAAGGGAGAGAACAATGGCTTCATGATTTGGATGATAAATCTTCCACTACCCAACTCTCAATTTCTATTCCCTCCTCTGCTCATGATTTTCCAACTTTCACTTCTAGCACACACCATGATGATTGA 1059 0.3126 MNKNRFPFTPSQWQELEHQALVYKYMASGISIPPDLLFTIRRSFFDSPLISSTLLPNQTQQQHFGWNYLQMGIGRKIDPEPGRCRRTDGKKWRCSKEAYQDSKYCERHMHRGKNRSRKPVEVFKTTTTNANANANANANNPSTLTSNNSSLSFDTQQHHHHSHLQHSFLYHHPSSKSSSSTAIVLSSYEDNSAPLFLDTNSCSHNNTDYRNRYVYGEKEDVDEYAFFKEPSGSSTMKSFSTSSMDRDSWQLTPLTMSSSSSSSSSRLRSFSSLSNDYSCLQLQSLSEQSKQQEQEKEPQKTVHRFFDEWPHKGREQWLHDLDDKSSTTQLSISIPSSAHDFPTFTSSTHHDD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01241 352 PANTHER - 2 339 IPR031137 GO:0005634|GO:0006351|GO:0032502
Car01g01241 352 MobiDBLite consensus disorder prediction 328 352 - -
Car01g01241 352 MobiDBLite consensus disorder prediction 129 172 - -
Car01g01241 352 Pfam QLQ 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car01g01241 352 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car01g01241 352 Pfam WRC 79 121 IPR014977 -
Car01g01241 352 MobiDBLite consensus disorder prediction 129 155 - -
Car01g01241 352 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Car01g01241 352 MobiDBLite consensus disorder prediction 328 344 - -
Car01g01241 352 PANTHER GROWTH-REGULATING FACTOR 6 2 339 - -
Car01g01241 352 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01241 Car-Chr1 15351425 15353538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01241 4 121 GRF Transcription Factor Family AT3G13960 66.949 2.28e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Car01g01241 WRC 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01241 - - gmx:100781613 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01241 01 15351425 15353538 Car01g01241 01 15351425 15353538 ECH
Car07g00365 07 3222955 3225001 Car01g01241 01 15351425 15353538 PCT