Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01231 ATGGTTGATGTTCTAAGCCCTTTCACAATTCCATCCCCTCCTCCACCATCTTCTTTTTCATCAAACAAAAACAATAGCATACCCATGTTATACTATGGTCTTGTTGTGATGGGAATTGCAGCCATAGTTCTAGCAATTTACAACATCATTATAATCAAACGTTGCAATAGGAGCCACAATCAAGCACAACCCACAAGCCCAACTCTTATGGTTATTGAAAATAGTAATAATAGGAGCTTTGGAAACTCACAAAGGAACTTGCTTTCAAGCTTCAAGTACAAAAAAGAAGTGGTAACAAAAGAAGAAGAGAAAAAGGGTGATTTTGATTATGAATGTTCTGTTTGTTTGTCGGTTTATGAAGAAGGGGAAGATGTTAGGAAATTACCAAAGTGTAAACATTGTTTTCATGCTCTTTGTATAGATATGTGGCTTTATTCTCATTTTGATTGTCCAATTTGTAGAACACCTGTTGGGTCTTTTCGTCATAATTTTGTAGAAGAGAATTCTCGTGATGGGTTGATGGAATCCAGTGGTATTGTCTATGTTTGA 549 0.3588 MVDVLSPFTIPSPPPPSSFSSNKNNSIPMLYYGLVVMGIAAIVLAIYNIIIIKRCNRSHNQAQPTSPTLMVIENSNNRSFGNSQRNLLSSFKYKKEVVTKEEEKKGDFDYECSVCLSVYEEGEDVRKLPKCKHCFHALCIDMWLYSHFDCPICRTPVGSFRHNFVEENSRDGLMESSGIVYV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01231 182 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 169 - -
Car01g01231 182 CDD RING-H2_EL5_like 111 154 - -
Car01g01231 182 MobiDBLite consensus disorder prediction 1 20 - -
Car01g01231 182 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Car01g01231 182 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 169 IPR044675 -
Car01g01231 182 Pfam Ring finger domain 111 154 IPR001841 -
Car01g01231 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 158 IPR013083 -
Car01g01231 182 SUPERFAMILY RING/U-box 91 160 - -
Car01g01231 182 SMART ring_2 112 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01231 Car-Chr1 15181748 15182581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01231 20 157 C3H Transcription Factor Family AT1G04360 32.192 2.22e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01231 - - aprc:113852327 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01231 01 15181748 15182581 Car01g01231 01 15181748 15182581 ECH