Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01228 ATGAAGTCTTTTCTCTTTTTGAATCATCCAAATTCTGAGTTCAATTGCTCGCCAGTTGATCGTAATCACTCAATGGCTCATGCTCCTTATCCTTATGGTGATCCAATTTTCGCTGGTTCGTTAGTTGCTTATGCCCCGCAGGCTGTTAATCAACCTCAAATGTTGCCTCAAATGATGGGATTAGCATCTACTAGAGTTGCATTACCACTTGATCTTGCACAAGATGGACCCATTTATGTCAATGCAAAACAATACCACGGTATACTCAGAAGGCGACAATCACGAGCTAAGCTTGAGGCTCAGAACAAACTCATCAAAAGTCGTAAACCATATCTTCACGAGTCTCGGCACAAGCATGCGTTGAATAGGGTTAGAGGATCCGGGGGCCGATTTCTGAGCACAAAACAGCTTTCACAGTCTAATACAGAATTTGTCACTGGTAATCAATCTGGCTCTGGGTCTATCAACAAATATCAAAAGGAAGATGAGATGGAAAGTCGTTCTTCGAAAACCGGAGATAATGCATCTTCCATCACAACATGTTCGGACCGGACATGTTTTTCGGGTAACAGTTTCAATTTTAGGCAGCCAGAGCACATGTTTCTAGGGAACTCTCCAAACATGGGTGGAGGTCCACCACAATGCAGTGGTGGACTCACATTTGGCGGAACAAAACAACGCGCTTCGGTTGTCCGGTGA 699 0.4406 MKSFLFLNHPNSEFNCSPVDRNHSMAHAPYPYGDPIFAGSLVAYAPQAVNQPQMLPQMMGLASTRVALPLDLAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHKHALNRVRGSGGRFLSTKQLSQSNTEFVTGNQSGSGSINKYQKEDEMESRSSKTGDNASSITTCSDRTCFSGNSFNFRQPEHMFLGNSPNMGGGPPQCSGGLTFGGTKQRASVVR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01228 232 MobiDBLite consensus disorder prediction 140 157 - -
Car01g01228 232 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 217 IPR001289 GO:0003700|GO:0006355
Car01g01228 232 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Car01g01228 232 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 217 - -
Car01g01228 232 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Car01g01228 232 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Car01g01228 232 MobiDBLite consensus disorder prediction 140 176 - -
Car01g01228 232 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Car01g01228 232 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Car01g01228 232 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Car01g01228 232 Gene3D - 74 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01228 Car-Chr1 15112552 15116372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01228 24 191 CCAAT-HAP2 Transcription Factor Family AT1G17590 48.295 6.44e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car01g01228 CBFB_NFYA 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01228 K08064 - gmx:100793856 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01228 01 15112552 15116372 Car01g01228 01 15112552 15116372 ECH