Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01226 ATGGAAGTtgctgctgctgccgctgctgctgGACCTCCGTCTAACCCTCGTACCGTCGAAGCCGTTTTCCGTGACTTCAAGGGTCGTAGAGCTGGCATGATTAAAGCTCTCACCACTGATGTTGATGAGTTTTACCAGCAGTGTGATCCTGACAAGGAGAACCTTTGTCTGTATGGATATCCCGCTGAAATATGGGAAGTTACTTTACCTGCTGAAGAAGTTCCTCCTGAACTCCCGGAACCTGCATTGGGCATAAATTTTGCTAGGGATGGAATGGACGAAAAAGACTGGCTATCTTTAGTTGCTGTTCACAGTGATACATGGCTACTCTCTGTGGCTTTCTACTTCGGGGCAAGATTTGGTTTTGATAGAGCTGACAGGAAACGCCTTTTCACTATGATTAATGATCTTCCCACAATATTTGAGGTTGTGACTGGAACTGTAAAGAAACAGGCAAAGGAAAAGCCATCAGTCTCAAGCCACAACGGCAACAAATCGAAGTCGGGTTCCAAAGCGCAGCGCGGATCTGAAATGGGAAAGTATTCAAAGCCAGCAAAAGAAGAGGACGATGGATTGGACGAAGAAGAAGAGGAGCAAGGGGAGTGCGCCGCATGTGGTGAGAGCTATGTATCTGCATCTGATGAGTTCTGGATTTGTTGTGACTTATGTGAGAAGTGGTACCATGGCAAATGTGTGAAGATCACTCCTGCCCGGGCGGAGCACATCAAGCACTACAAGTGTCCTGCATGCACCAATAAGAGAGCTCGGCCTTGA 774 0.4574 MEVAAAAAAAGPPSNPRTVEAVFRDFKGRRAGMIKALTTDVDEFYQQCDPDKENLCLYGYPAEIWEVTLPAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFTMINDLPTIFEVVTGTVKKQAKEKPSVSSHNGNKSKSGSKAQRGSEMGKYSKPAKEEDDGLDEEEEEQGECAACGESYVSASDEFWICCDLCEKWYHGKCVKITPARAEHIKHYKCPACTNKRARP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01226 257 CDD PHD_AL_plant 202 253 IPR044104 -
Car01g01226 257 Pfam Alfin 18 146 IPR021998 GO:0006355|GO:0042393
Car01g01226 257 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 14 257 - -
Car01g01226 257 SMART PHD_3 201 251 IPR001965 -
Car01g01226 257 SUPERFAMILY FYVE/PHD zinc finger 192 254 IPR011011 -
Car01g01226 257 MobiDBLite consensus disorder prediction 152 194 - -
Car01g01226 257 MobiDBLite consensus disorder prediction 157 175 - -
Car01g01226 257 ProSiteProfiles Zinc finger PHD-type profile. 199 253 IPR019787 -
Car01g01226 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 256 IPR013083 -
Car01g01226 257 Pfam PHD-finger 202 253 IPR019787 -
Car01g01226 257 PANTHER CPG BINDING PROTEIN 14 257 IPR045104 GO:0006355|GO:0042393
Car01g01226 257 ProSitePatterns Zinc finger PHD-type signature. 202 250 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01226 Car-Chr1 15083896 15087581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01226 15 256 Alfin-like Transcription Factor Family AT3G42790 71.255 1.24e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Car01g01226 Alfin 5.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01226 - - qsu:112023497 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03063 07 57647116 57650898 Car01g01226 01 15083896 15087581 ECH
Car01g01226 01 15083896 15087581 Car07g03063 07 57647116 57650898 ECH
Car01g01226 01 15083896 15087581 Car01g01226 01 15083896 15087581 ECH