Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01205 ATGGAACCTCGCGTTGGTAATAAGTTTCTACTAAAGGGAAAAATTGGTAGTGGTTCGTTTGGGGAGATTTATTTAGGTACTAACATCCAAACTAATGAAGAGGTTGCAATTAAGCTTGAAAAGGTCAGGACAAAGCATCCTCAGTTGCCGCATGAATCCAAGCTGTACAGAACACTCGAGGGAGGAATTGGAATTCCAAATATGAAATGGTTTGGAGTGGAGGGAGATTACAATGTTCTAGTAATGGATCTGCTTGGACCTAGTCTTGAAGATCTGTTTAACTTCTGTAATAGAAAGCTCTCCCTAAAGACAGTTCTCATGCTTGCTTATCAAATGATTACTCGTGTTGAGTTTGTTCATTCTAAATCGTTTATCCATCGAGATATCAAACCAGATAATTTCCTCATGGGCTTGGAAAAGAGGGCAAACCAGGTTTACTGTATTGATTTTGGTTTAGCAAAGAAATATAGAGATAGTTCAACACATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATAAATACCCACATTGGCATTGAGCAAAGTCGAAGAGATGATTTAGAGTCTCTTGGTTATGTCTTGATGTACTTTCTAAGAGGAAGTCTTCCTTGGCAAGGACTTCAGGCAGCAACAAAGAAACAAAAGTATGAGAGAATCAAAGAAAAGATGGTTTCTACCTCGATTGAGGCTTTGTGTCGAGGTTATCCATCAGAATTTGCATCATACTTCCATTATTGTCGGTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGCAACTTATTTAATCGCGAAGGATTCCAGTTTGATTATGTGTTTGATTGGGTTATTATGAAGTATCAGCAATCACAGCTAGCCACTCCTCCAGTACGTGCTATTGGGCCTAGTCCTGGAACTAGTTCTGGAATGCCTCCTGTTATGACTAATGCTGATAGACAGACAGGAAGGGAAGAAGGACGTCATCCTCCTCCTCATGGGTTGGTTTCGATAGACTATTCAAATGGAAGAATGTCAGAACCAATTTTAaactag 1077 0.39 MEPRVGNKFLLKGKIGSGSFGEIYLGTNIQTNEEVAIKLEKVRTKHPQLPHESKLYRTLEGGIGIPNMKWFGVEGDYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLAYQMITRVEFVHSKSFIHRDIKPDNFLMGLEKRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAATKKQKYERIKEKMVSTSIEALCRGYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRNLFNREGFQFDYVFDWVIMKYQQSQLATPPVRAIGPSPGTSSGMPPVMTNADRQTGREEGRHPPPHGLVSIDYSNGRMSEPILN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01205 358 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Car01g01205 358 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Car01g01205 358 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Car01g01205 358 Pfam Protein kinase domain 12 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01205 358 MobiDBLite consensus disorder prediction 309 358 - -
Car01g01205 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Car01g01205 358 SMART serkin_6 9 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01205 358 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 312 IPR030509 GO:0004672|GO:0005524
Car01g01205 358 PANTHER CASEIN KINASE-RELATED 1 312 - -
Car01g01205 358 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01205 358 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01205 Car-Chr1 14785748 14790222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01205 1 318 MAP Kinase Kinase Kinase AT5G50180 25.455 1.02e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Car01g01205 Pkinase 8.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01205 K02218 - gmx:100785851 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01205 01 14785748 14790222 Car01g01205 01 14785748 14790222 ECH
Car07g00333 07 3000830 3007711 Car01g01205 01 14785748 14790222 PCT