Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01198 ATGGAAGGTGTATTTTCCCTTCCTATAGCAATCAGAACAGATTTTATCCATTCTCTAATGCAATCTCTTGGATGCTCTTACATTTGTCTTTGGACATATGATACCATATTCCCAAATCGTTTGTCCTTCTTGGATGGTACCTACAATGTAATAAACAATCAACCAAGCTCTTCTTTAGGAAGTGTAGCACAACATCTTTTTAATCAATACAAGATCTTATCATTTGATGTCAATGATGACCGTGTTCCTGGACTTGCTTTTCGGAATCAATGTCCTTACTTGGAGTTGCAACAATTAGAACTTCTAACATTGTCATCAAAAGAAATACAAACACAATTTTATCAGGAAGCAAGGATTAAGAGTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTGGGTTTCTTAGATATGTCTCAAGTTGATATTCAAACAGCACTTAGGGGTTTATTTCCTGAAGATTTTTCTAGACAACAACAACAACAAATCGATCATCAAAATAATCCACTTTCATCATCTTCATCTTCAATGAGATCACTATCAACAGGTAGTCCTGAATATTCATCACTAATATTCAACAACATTAATCCAGGAACATCTTCACCTAGTTTTCCTGAAAATACCCTTCCACCAATGAGACCAATTTCAAACACACCCcttcaacttcaacttcaactccaacatcaacAATTGACTCATCAAATCACACAAACACAATTCCCTACAACAACACAAATTGATCATGAAACAATTATGAGAGCAATTCACAATGTTCTAACTTTACCTTCTCATCATCAAAATGAACAAAATAATTGGCCTTATGGAATGCATTTAGAAGCTAGTGGATTTGGAAGATATAGAGGTGGTGATAGAAGTCCTAATATAGGATCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTGCATTCTTTAGAAGTTTGAATTTTATAAGATTGAGAGAAAGAAATCAAGCAGCGACTCGTCCTTCTAATAACCAACTTCATCATATGATTTCGGAGCGAAGAAGGCGCGAAAAGCTTAATGATAATTTCCATGCACTTAGGACTTTACTACCTCAAGGAACTAAGAAAGACAAAGCTTCCATTCTTATAACTGCAAAGGAGACATTAAGGTCATTGATGGCTGAAATAGATAAATTAAGCAAAAGAAATAAGGATTTAATGTCACAATTACAAGCCAAAGAATTATCAACTACAACAACTCAAGAAATTACCAAAGCTAGCAATTTCTCATCAAATGAAAGATTAAATGTGAGAGTATTGCATGTACCGGAATCAAGCACATCATCATTAGAAAATCAACCTATGGTGGACTTGCAAGTGAATGTGATGGGACAAATTTCTCAAGTTGATATTTTGATTAGATTATTGGAATTCTTAAAACAAGTTCAACATGTCAACTTGGTTTCAATTGATGCAACAAACACAAATAATGCACAAGTTAATTCCATTCATCAATTAACCTTCAGGCTAATGATTACTCAGGGAAGTGAATGGGACGAGGGTGCCTTCCAGGAAGCAGTGAGAAGAGTAGTTGCTGACTTTATACAATATGTGGACCAAAATCTATGA 1599 0.3402 MEGVFSLPIAIRTDFIHSLMQSLGCSYICLWTYDTIFPNRLSFLDGTYNVINNQPSSSLGSVAQHLFNQYKILSFDVNDDRVPGLAFRNQCPYLELQQLELLTLSSKEIQTQFYQEARIKSAVFMGCNKGEIELGFLDMSQVDIQTALRGLFPEDFSRQQQQQIDHQNNPLSSSSSSMRSLSTGSPEYSSLIFNNINPGTSSPSFPENTLPPMRPISNTPLQLQLQLQHQQLTHQITQTQFPTTTQIDHETIMRAIHNVLTLPSHHQNEQNNWPYGMHLEASGFGRYRGGDRSPNIGSNFRRQSLMKRSFAFFRSLNFIRLRERNQAATRPSNNQLHHMISERRRREKLNDNFHALRTLLPQGTKKDKASILITAKETLRSLMAEIDKLSKRNKDLMSQLQAKELSTTTTQEITKASNFSSNERLNVRVLHVPESSTSSLENQPMVDLQVNVMGQISQVDILIRLLEFLKQVQHVNLVSIDATNTNNAQVNSIHQLTFRLMITQGSEWDEGAFQEAVRRVVADFIQYVDQNL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01198 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Car01g01198 532 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 524 - -
Car01g01198 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 401 IPR036638 GO:0046983
Car01g01198 532 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 524 IPR044658 -
Car01g01198 532 MobiDBLite consensus disorder prediction 157 185 - -
Car01g01198 532 Gene3D - 332 407 IPR036638 GO:0046983
Car01g01198 532 Coils Coil 372 406 - -
Car01g01198 532 Pfam Helix-loop-helix DNA-binding domain 337 382 IPR011598 GO:0046983
Car01g01198 532 CDD bHLH_AtbHLH_like 338 390 IPR045239 -
Car01g01198 532 SMART finulus 339 388 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01198 Car-Chr1 14539241 14544625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01198 12 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.042 1.55e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g01198 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01198 - - gmx:100807098 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01198 01 14539241 14544625 Car01g01198 01 14539241 14544625 ECH