Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01180 ATGGCTGAGGATTACAACACATCCATGTTGGATCTTAATCTTCAACTTGGATTAGGAAGCTATGTGCAAAATAAGGTGAACAAACCATTGGTTAATTCAAAAGAGGAATTAGCCTTTGATTTGAATCAAGATGATAAGGCAAATGAATTAAGTTTGAAGAGAGTGCATGAAGAACATCCAAATGACTCAAATGAAGAAATTACTATTAGCACCAATGACAAGAATGGGGGTGCAAAGAAATTGAGGCTTACAAAGGAGCAATCAGACATGCTTGAGGATGCTTTCAAGCTTCATAACACCATTAACACCGCTCAGAAACGGGCACTTGCTGAACAATTGAATTTAAAGCATAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGAACTAAGCTGAAGCAAACAGAGGTAAACTGCATATTCTTGAAGAAATGTCATGACAAACTAAATGAAGAGAACCTAAGGTTGAAGAAGGAATTAGAAGAGCTGCGTGCATTAAAAATTGGACCATCATACACTTCTCAATCATCCAAGGCTGCAAATTGGACCATTTGTTCATCTTGCAAGAAAATTTGGAAGCCAAATGAAGGACATAACAATGAGGAGGATGGGGTCAGAAAGAGCAGCCAAAGCACCATAGAGTTAGATTAG 654 0.3792 MAEDYNTSMLDLNLQLGLGSYVQNKVNKPLVNSKEELAFDLNQDDKANELSLKRVHEEHPNDSNEEITISTNDKNGGAKKLRLTKEQSDMLEDAFKLHNTINTAQKRALAEQLNLKHRQVEVWFQNRRARTKLKQTEVNCIFLKKCHDKLNEENLRLKKELEELRALKIGPSYTSQSSKAANWTICSSCKKIWKPNEGHNNEEDGVRKSSQSTIELD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01180 217 MobiDBLite consensus disorder prediction 195 210 - -
Car01g01180 217 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 35 199 - -
Car01g01180 217 Pfam Homeodomain 80 132 IPR001356 GO:0003677
Car01g01180 217 MobiDBLite consensus disorder prediction 195 217 - -
Car01g01180 217 CDD homeodomain 79 135 IPR001356 GO:0003677
Car01g01180 217 PANTHER - 35 199 - -
Car01g01180 217 Gene3D - 83 131 - -
Car01g01180 217 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Car01g01180 217 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Car01g01180 217 SUPERFAMILY Homeodomain-like 66 135 IPR009057 -
Car01g01180 217 Coils Coil 143 167 - -
Car01g01180 217 SMART HOX_1 76 138 IPR001356 GO:0003677
Car01g01180 217 MobiDBLite consensus disorder prediction 56 76 - -
Car01g01180 217 SMART halz 134 177 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01180 Car-Chr1 14023451 14025481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01180 79 202 Homeobox Transcription Factor Family AT4G17460 58.065 9.21e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car01g01180 Homeodomain 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01180 K09338 - gmx:100790522 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00311 07 2828107 2829761 Car01g01180 01 14023451 14025481 PCT