Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01173 ATGGCTGTGGAAACCATAGGTGTTCATAAATTCATGACGGAGGAACAATTAGCTATACAAGAAGCTGCTTCAGCTGGAATAAAAAGCATGGAACATCTCATTCGTCTTCTTTCCTCTCAAACACCTTCTTCATCTTCTTCTCATAAAATTTCTTCAAACAACCTCGACTTCTCCGAAATAACCGATTTTACCGTATCTAAGTTCAAACAAGTCATCAACCTTTTAAACCGTACCGGCCACGCCCGATTCCGCCGTGGACCACTGCCGCAACAACAACCTCAGATCCATCATGAATTAAATCTAGAATTGCCGAAACTCGACAACATCCTTAAAAACAAAGAGGATAATCAAACTCTTACAGTCTCAAACACCACCAACTCTTCTTTCTTGTCTTCCATCACCGCCGACGCTAGTGTCTCCGACGGTAAAATTGGACCCTTTTTAACGAACCCTGCAATTAAACCACCTCTTTCTTCATCTCACCGGAAAGTATATCATGAAGCTGCACCTTCACCGTCGAACTGCCATTGCTCCAAAAAAAGGAAATTACGAGTGAAAAGAACAATCCGTGTGCCGGCTATAAGCTCCAAAGTTGCTGATATTCCTCCGGACGAATTCTCTTGGAGAAAATATGGTCAAAAACCGATCAAGGGTTCCCCTTACCCTCGTGGGTACTATAAATGTAGCACCGTGAGAGGATGTCCGGCAAGGAAGCACGTGGAACGAGCACAAGACGATCCAAACATGCTTATCGTCACGTACGAGAATGAGCACCGTCATGCACAACCGTTAACCGCCGCTCCCGTCGTTGGTTTCAGCCTTCAGTCTTGTTGA 834 0.4472 MAVETIGVHKFMTEEQLAIQEAASAGIKSMEHLIRLLSSQTPSSSSSHKISSNNLDFSEITDFTVSKFKQVINLLNRTGHARFRRGPLPQQQPQIHHELNLELPKLDNILKNKEDNQTLTVSNTTNSSFLSSITADASVSDGKIGPFLTNPAIKPPLSSSHRKVYHEAAPSPSNCHCSKKRKLRVKRTIRVPAISSKVADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPNMLIVTYENEHRHAQPLTAAPVVGFSLQSC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01173 277 Gene3D WRKY domain 189 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g01173 277 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01173 277 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 94 - -
Car01g01173 277 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 111 267 - -
Car01g01173 277 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 94 IPR044810 GO:0003700
Car01g01173 277 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 111 267 IPR044810 GO:0003700
Car01g01173 277 SUPERFAMILY WRKY DNA-binding domain 200 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g01173 277 SMART WRKY_cls 202 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01173 277 Pfam Plant zinc cluster domain 163 200 IPR018872 -
Car01g01173 277 ProSiteProfiles WRKY domain profile. 197 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01173 Car-Chr1 13879334 13880997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01173 1 262 WRKY Transcription Factor Family AT2G24570 48.243 1.68e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car01g01173 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01173 - - gmx:100127391 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00306 07 2768127 2770088 Car01g01173 01 13879334 13880997 PCT