Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01163 ATGACCAAGGAGGAAGTGAAATCGGTGGTTCCAGAATCCGTTTTGAAGAAGCAGAAAAGGAGTGAGGAATGGGCTTTGGTTAAAAAGCAGGAACTTGAATCAGAGAAGAAGAAAAGATCTGAAACAAGGAAACTCATTTGGAGTAGAGCCAAACAATACGCTAAGGAATACGATGATGCGCAAAAGGAGTTGATTagcttgaagcgtgaagctaagcttaagggtggattttatgttgaccctgaagctaaaCTCTTGTTCATTATCAGGATCAGAGGTATCAATGCCATGGATCCAAAATCAAGGAAGATTTTGCAGCTTTTGCGTTTGAGACAGATTTTTAATGGTGTCTTTCTCAAGGTCAACAAAGCCACCGTGAACATGCTCCACAGAGTTGAGCCTTATGTTACATTCGGGTATCCTAACCTGAAGAGTGTCAGGGAATTGATCTACAAGAGAGGATACGGCAAAGTCGACAGGCAGAGAATTGCTTTGACAGACAACTCTATCATCGAGCAGGTTTTGGGGAAGCACGGGATAATTTGCATTGAAGATCTTATTCATGAGATACTGACGGTTGGACCTCACTTCAGAGAGGCAAACAACTTCCTGTGGCCTTTTAAGCTGAAAGCACCCCTAGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGTGGTGATGCTGGCAACAGGGAAGATTACATCAATGAACTCATTAGAAGAATGAATTAA 735 0.385 MTKEEVKSVVPESVLKKQKRSEEWALVKKQELESEKKKRSETRKLIWSRAKQYAKEYDDAQKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01163 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Car01g01163 244 PANTHER 60S RIBOSOMAL PROTEIN L7 6 244 IPR039699 -
Car01g01163 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Car01g01163 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Car01g01163 244 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Car01g01163 244 Gene3D - 85 190 IPR036919 -
Car01g01163 244 Gene3D - 191 244 IPR036919 -
Car01g01163 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
Car01g01163 244 Coils Coil 50 70 - -
Car01g01163 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Car01g01163 244 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 6 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01163 Car-Chr1 13653462 13656088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01163 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 81.557 2.05e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01163 K02937 - jre:109006184 404.445