Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01155 ATGGAGAATATTGGTGAAGAATACAAGCATTATTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGACAGCTGGGGATTGGATGAGGCTTTTTCAGGGTACTATGACTCAAGCTCCCCTGATGGTGCAGCATCATCAGCAGTGTCCTCTAAGAACATTGTCTCTGAAAGGAATAGGAGGAAGAAACTCAATGAAAGACTCTTTGCACTTAGATCAGTGGTCCCCAATATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCTATTGAGTACATACAACACTTGCATGAACAAGAGAAGATTATTCAAGCTGAGATAATGGAGCTTGAATCTGGGATGCCtaataataataataataataatattaatCCAAGCAATGATTTTGATCAAGAACTTCCTATTTTGCTGAGGTCCAAGAAGAAGAGAACAGATCAATTATATGACTGTGTCACTTCAACAAGCTTCCCAATTGAAGTTCTTGAGCTTAGGGTAACATACATGGGAGAAAATACAATTGTTGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAATTGTGTGAAGTGTTTGAATCTTTAAAGCTCAAAATTATTACTGCCAACATCACTTCTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGTTAATTACTTTCTCTTCTCTTCTTTAATTTCACTTTTTAGTTTTATAATTAAAATATTATAA 723 0.361 MENIGEEYKHYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSAVSSKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELESGMPNNNNNNNINPSNDFDQELPILLRSKKKRTDQLYDCVTSTSFPIEVLELRVTYMGENTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEVNYFLFSSLISLFSFIIKIL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01155 240 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Car01g01155 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Car01g01155 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 225 - -
Car01g01155 240 SMART finulus 54 103 IPR011598 GO:0046983
Car01g01155 240 PANTHER TRANSCRIPTION FACTOR BHLH35 1 225 - -
Car01g01155 240 Gene3D - 46 114 IPR036638 GO:0046983
Car01g01155 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01155 Car-Chr1 11958213 11961829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01155 1 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.126 1.02e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g01155 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01155 - - gmx:100817978 369.007