Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01154 ATGACGGAACAAACAAAATTCAGCGTATTATGCAGTCTACTAACATGGACACAGCGAACCAAATCGCCGGCGAAGAAACGCGCCAAGTTTCGCAAATTCCTCGACTCTTTCTGCACCGATCGCAACTACTTCCCGGCTATTCGTCTCATTCTTCCTAACCTTGATCGCGAACGAGGCTCCTATGGTCTCAAAGAGTCCGTTCTCGCTACTTCACTTATTGATGCTCTTGGATTGTCTAAAGACTCACATGACGCTCTTCGTCTTGTCAATTGGCGTAAAGGCGGTTCTAAAACAGGTGTTAATGCCGGTAATTTCGCCCTTGTTGCCTCCGAGGTGCTGCAGCTCAGGCAAGGTACTGCTTCGGGTGGATTGACGATAAAAGAGTTGAATGACTTGCTTGATCAATTGTCTTCGAGTGAAAACAGGGCTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCTTGAAAGATTTGAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACGTGTGACCTGAAATTAGTTTGTGAAAAGCTAAGGGATCGAAACCAACGTCATAAGCGGCAGGATATTGAGGTTGGAAAAGCTGTGCGCCCTCAATTAGCTAAAAGAGTAGCTAATGCAGCTGAAGCATGGAAGAAGCTTCATGGCAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGACCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCGATGTCAGAAATCATAGTACAAAACATTCTTGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTCTGGGATACATCCTTGAACCGTTTTGCTGAGTTTGGCTCTAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTAATAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGGGATACTAGTGTAATTCACCAAACATTGAAGGAGCGGCATGAGATTCTACGTAAAGTTGTGAGGCCCATGAAGGGTCGTTTGGAAATTTTACTACCTAATGGTGGTATCAACAGTCATCGGTCTTCTGGTGAACCATGTTGGTCGTTTATTGCTCATAATGCGGACGAAGTTGAGAGATTTTTCAAAGAAACCATTGAGAATAGAGACGAGGGAATTGTAGTAAAAGACCTCAGCTCTAAATGGGAACCTAGTGACCGCAGTGGAAAATGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACGTGGAGGAGAGGTTGCTCAATTCTTGGTGGGCCTTGCAGAGCGTCCATCACCAAATACACATCCCAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGACGAGCTTGAAGCAGTGGTAACCAAATTAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGGGGCCACCAAATTTTTATCAAGTTACTAATCACTCCAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTGTTTGCTGCACCTTACTGCCTGAGGTTTCCTCGTATTGACAGGGTGAGATATGACAAGCCTTGGTATGAATGTCTTGATGTACAATCATTTATAGAATTAGTGCAATCTAGCAACGGTACCACACAGAGGGATACAGAATATGGGAGCAAGAAGGACAGTAAACCCAAACGCATGAAGCCCTCTATAAGGGGTGAAAAGAAAAATGTGTCCATTGTTCCTTCTCATTTAATTCAAACCGATGTTTCCAGTGTTACGGGGGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTTAATGTGCCTCCATCGCATTCCCTTGAGTCCTTCCACAAAATAGTTGCTGAGAATGGGGGCACTTTCTCGATGAATTTGAATAACTCAGTCACGCATTGTGTTGCAGCAGACAGCAAAGGGTTTAAATTTGACGCAGCAAAACGCCGTGGTGATATCATTCATTATACTTGGGTATTAGATTGCTATAAACAAAAGAAGCTTGTCCGCTTACAGCCGAAGTACTTCCTCTTCCTATCTGAACTGACCAAGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCGGACTCTTACTTCTTGGATCTCGATCTTGGAGACATCAAACAGCTCTTAAGCAATATTAATAGGTCAGGTTCAGAAGATGTCAGTACTGTTGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCGGTGTTTAATGGATGCTCCATTTATTTCGACACCACAATGCCATCATTGAAAGAAGATTGGCAATTTCTATTGGTACTTTCTTTGAAGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAGGTCACCTCTAACCTCAATTTTGCAACTCATGTAGTGGCCTTGTTCCTACCAAGTTGTCATAACCATGAAGAAATAGAGAGTAGTTTTACTTTAGTTGAGAGAAAACTTCTTCGAAGCAAGAGGTTGCATGTAGTTAACTCCAAGTGGTTAGAGGATTGTTTGAAGAGTAGCCAAAGATTATCAGAAGACACTTATAGCTTGAAGCCCTATGGAATAGAAGAGTCAACTGCCGAGGATTGTGAACATGAATTGGCGGTAGATGCTGATCTGATTAAAGATAATGTGGAAGACCAAAATATATCTTTCTCTAACAAGGAAAGTAAACAGAGTAGGGCAAAAGCTGCTTCTGGAGACAGTTTGGCTTTGGCATCCCAAGAGAAGCGTGGCCTAAGGAAACGAGGAAGACCTGCAGGAAGAGGTATTAAAAAAGTGAAAACAGACGGAAACCAAGCTCGAAAAGCACGATCGCAAATCGCGAAAAAGCGTGCAAAATTATGTGAATATGAATCAGATGAAAGTGATTCTCTTGATAAAAAACCATATGAGCAAGAGGCTGACATTGCTGAAGGAAGTCTTGATTTTTACAATGAACATTCAGAACCACATGAGACTGAGAAAACTCATGATGTCCAAGGTACTAAAGCAGTGGAATGTTCCGAACAAAACAAGGGAATCGAGCTAGTGGATTTCAGGGACAAACAACATGAAAATATGTCTGTTCCAGAAATTGAAATGAATGATGTGCACAATGACGAAAATAGTCATGTGACTGAGAAGCTTGAAATTTTGACTGATCCTGTGCAGGCTATGTTACTTGACATGATTCCTAGCCTTGCCACAGAAAAAGTTGAGCAACCTTTGAATAGTTATGTTGAGGAAGAGAAGCCACCAGAAATCTCCAATGAAGAGCCTTCGACTTCAAAGAAAAAGAAAGTTAGCTTCAAGGCTATCGCTGGTGATCTGCTCAAGGATTGGTAG 3507 0.4126 MTEQTKFSVLCSLLTWTQRTKSPAKKRAKFRKFLDSFCTDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGLSKDSHDALRLVNWRKGGSKTGVNAGNFALVASEVLQLRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIVQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSNRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVRPMKGRLEILLPNGGINSHRSSGEPCWSFIAHNADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELEAVVTKLKPYFRKYEYPKKGPPNFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYCLRFPRIDRVRYDKPWYECLDVQSFIELVQSSNGTTQRDTEYGSKKDSKPKRMKPSIRGEKKNVSIVPSHLIQTDVSSVTGGSLMFSNMMFYFVNVPPSHSLESFHKIVAENGGTFSMNLNNSVTHCVAADSKGFKFDAAKRRGDIIHYTWVLDCYKQKKLVRLQPKYFLFLSELTKKKLQEEIDEFSDSYFLDLDLGDIKQLLSNINRSGSEDVSTVDHYRKKYCPKDKWSVFNGCSIYFDTTMPSLKEDWQFLLVLSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCHNHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQIAKKRAKLCEYESDESDSLDKKPYEQEADIAEGSLDFYNEHSEPHETEKTHDVQGTKAVECSEQNKGIELVDFRDKQHENMSVPEIEMNDVHNDENSHVTEKLEILTDPVQAMLLDMIPSLATEKVEQPLNSYVEEEKPPEISNEEPSTSKKKKVSFKAIAGDLLKDW 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01154 1168 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Car01g01154 1168 ProSiteProfiles BRCT domain profile. 799 910 IPR001357 -
Car01g01154 1168 Gene3D BRCT domain 666 779 IPR036420 -
Car01g01154 1168 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car01g01154 1168 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car01g01154 1168 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Car01g01154 1168 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Car01g01154 1168 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Car01g01154 1168 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Car01g01154 1168 MobiDBLite consensus disorder prediction 944 998 - -
Car01g01154 1168 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Car01g01154 1168 SMART BRCT_7 653 729 IPR001357 -
Car01g01154 1168 SMART BRCT_7 816 900 IPR001357 -
Car01g01154 1168 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Car01g01154 1168 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Car01g01154 1168 SUPERFAMILY BRCT domain 794 912 IPR036420 -
Car01g01154 1168 Pfam BRCT domain, a BRCA1 C-terminus domain 654 736 IPR001357 -
Car01g01154 1168 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Car01g01154 1168 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car01g01154 1168 Coils Coil 126 146 - -
Car01g01154 1168 MobiDBLite consensus disorder prediction 1129 1154 - -
Car01g01154 1168 Gene3D - 444 605 IPR012340 -
Car01g01154 1168 MobiDBLite consensus disorder prediction 605 629 - -
Car01g01154 1168 MobiDBLite consensus disorder prediction 1130 1154 - -
Car01g01154 1168 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car01g01154 1168 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Car01g01154 1168 CDD OBF_DNA_ligase_IV 448 592 - -
Car01g01154 1168 PANTHER DNA LIGASE 4 2 911 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Car01g01154 1168 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car01g01154 1168 MobiDBLite consensus disorder prediction 610 629 - -
Car01g01154 1168 Gene3D BRCT domain 799 910 IPR036420 -
Car01g01154 1168 SUPERFAMILY BRCT domain 284 740 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01154 214 601 Core DNA Replication Machinery Family AT1G08130 27.970 1.13e-30 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01154 K10777 - gmx:100816002 1914.81