Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01151 ATGCGGGATACCGAGAAGTTAAATAAAAGAGGTTTTGCAAAATCCAATAACTCAAAGGAACATATTGAGTCAAAGGTAGATTCATTCGGATTCAAAAAAAGTAGCACAAAAAAACGAGGGAAGAAACACAAGCTGACATCAAAATCTCAACAACTCAGAGGTTACACAAATGCATCGGGGAGAACCGCTACTAATTCTTCCATCAAGGCGCCAAGCAAGGATCCTTCGAATAAAAGATTGATTATTAGACAAAATCTACATAAAACCGATAAGAACTCTTCACAAGTTCAGCCTTCAAAAAAGATACAAGGAGGACAGATTTCTTATAGTAGTTATAGGAAAGGTGAGAAAGACGTTGATCAGGTGAAAAATACTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGGCAAAGACATAATGTAGATCTTGACGATACTTCACGGCTTCAGAGAAGAACAAGGAATCTCTTAATCAGAATGAAGCTTGAGCAAAACCTCATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAATGGAGCTACAAAGAGCAAAGAAGCAGATTTTAAAATGCAAGCTTAGTATCCGCGATGCCATTCGCCAGCTGGATTCTCTTAGTTCAGTTGGTAGCATTGAAGGTTCTGTCATTGCTAATGATGGATCTGTTTATCATGAACATATATTCTGTGCGAATTGCAAGATGCGTGAAGCTTTTCCAGATAATGATATTATACTATGTGATGGCTCATGCAATCGTGCTTTTCACCAGAAATGTCTTGATCCTCCTTTGGATACCGAAAACATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGCAAGATAGAAATACTTGAGGCAACAAATGCTCATCTCGGGACTCGTTTCTCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATTCCTGATGGCGATACTGCATTACTAAATCAAGAAGAAGAATGGCCCTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAAGATGACAACCACGGCATCGACACAGAAGGAAACAATGATAATGTATCTGATAATTCGAGTAGTTCTTCCAGTATGTGGTCTTTAAATGAGGAATGTTCTTTGTTAGATGAAGGCATCAACCTTGAATATTATTCTGGCAATGGCCACATAGATTCTGATGAATCCGGGGAAATAGCATGCGGTCATAGGCAGCGTAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGAAAGGATGCTACTCTGCATGAACAAGTGAGCGAAGACGAAGATTGGGGTCCTGGAAAAAGAAGGCGAAGAGAAAAGGAGTCCGATGCGGTTAATACTCTTATGACTCTACATGAGAGTAAAAATAAACGTCCAAATAACGAGAACAATGATAGAATAAGAGAGGATTCTTCAGGCATACCAATAAAAAGACCTTGTTTCAGGCTTCCACATGAAGCAGTTGAGAAGCTTCGCCATGTTTTCGCAGAGAATGAGCTTCCTCCAAGATCTGTGAAAGAATCCCTTTCGAAAGAGTTGGGAATTGATGTTGCAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAACGAGAAAGCATCAAGAAGGTGGAGAAGAGCTACAAAATTTCACCTCTAAGACCACAAAGGATTCTACATCACAACATGTGGAGAAAGATGAGATTTTGAAACCGAAGGTCTCAAAAATTACCGTAATTCGTTCCGTGAAGAATAGTGAAAATGTTGCTTGCAAAGAGAAAACAAAGGCATCTAGCAGTCCTTTGAAGAAAAAGCGACGAGAAATTCCTCTACCTTTGAGAGAAAATGGCAACAAGGACTCCAATGAGGTGAGTGATGATGTTAGCTTGATGAAACTGTTgaaagaaaggaaaaagaaagtaagTTTTGCATTTGAAGGAGACTCTGAGGCAGCAGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGATGAAATTAGATAGATTGAAGCAAAAAATAACTCAAGTTCAAAATTACAATTCAAAGGGTTCAAATGAACTTTATGTGAATGAGCCATCTATTATTTATGTACCTACAGCTGAGTTAAGGGAAAAGGTTAAATAG 2157 0.3866 MRDTEKLNKRGFAKSNNSKEHIESKVDSFGFKKSSTKKRGKKHKLTSKSQQLRGYTNASGRTATNSSIKAPSKDPSNKRLIIRQNLHKTDKNSSQVQPSKKIQGGQISYSSYRKGEKDVDQVKNTQKRKRRRKKKRQRHNVDLDDTSRLQRRTRNLLIRMKLEQNLIDAYSGEGWKGQSREKIRPEMELQRAKKQILKCKLSIRDAIRQLDSLSSVGSIEGSVIANDGSVYHEHIFCANCKMREAFPDNDIILCDGSCNRAFHQKCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTRFSLDSTWQDVFKEEAAIPDGDTALLNQEEEWPSDDPEDDDYNPERKDDNHGIDTEGNNDNVSDNSSSSSSMWSLNEECSLLDEGINLEYYSGNGHIDSDESGEIACGHRQRKAVDYKKLYDEMFGKDATLHEQVSEDEDWGPGKRRRREKESDAVNTLMTLHESKNKRPNNENNDRIREDSSGIPIKRPCFRLPHEAVEKLRHVFAENELPPRSVKESLSKELGIDVAKVSKWFKNARYMALKTRKHQEGGEELQNFTSKTTKDSTSQHVEKDEILKPKVSKITVIRSVKNSENVACKEKTKASSSPLKKKRREIPLPLRENGNKDSNEVSDDVSLMKLLKERKKKVSFAFEGDSEAAELEFERLSKVKMKLDRLKQKITQVQNYNSKGSNELYVNEPSIIYVPTAELREKVK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01151 718 MobiDBLite consensus disorder prediction 555 576 - -
Car01g01151 718 PANTHER POLYCOMB PROTEIN PCL 24 693 - -
Car01g01151 718 Gene3D - 491 557 - -
Car01g01151 718 SMART HOX_1 491 553 IPR001356 GO:0003677
Car01g01151 718 ProSiteProfiles Zinc finger PHD-type profile. 234 291 IPR019787 -
Car01g01151 718 MobiDBLite consensus disorder prediction 613 634 - -
Car01g01151 718 CDD homeodomain 492 553 IPR001356 GO:0003677
Car01g01151 718 MobiDBLite consensus disorder prediction 601 634 - -
Car01g01151 718 ProSiteProfiles 'Homeobox' domain profile. 489 549 IPR001356 GO:0003677
Car01g01151 718 Pfam Homeodomain 500 544 IPR001356 GO:0003677
Car01g01151 718 MobiDBLite consensus disorder prediction 323 375 - -
Car01g01151 718 MobiDBLite consensus disorder prediction 333 347 - -
Car01g01151 718 MobiDBLite consensus disorder prediction 438 461 - -
Car01g01151 718 MobiDBLite consensus disorder prediction 470 488 - -
Car01g01151 718 SUPERFAMILY FYVE/PHD zinc finger 228 293 IPR011011 -
Car01g01151 718 MobiDBLite consensus disorder prediction 49 73 - -
Car01g01151 718 MobiDBLite consensus disorder prediction 87 110 - -
Car01g01151 718 MobiDBLite consensus disorder prediction 1 144 - -
Car01g01151 718 SMART PHD_3 236 289 IPR001965 -
Car01g01151 718 ProSitePatterns Zinc finger PHD-type signature. 237 288 IPR019786 -
Car01g01151 718 MobiDBLite consensus disorder prediction 360 375 - -
Car01g01151 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 285 IPR013083 -
Car01g01151 718 Pfam PHD-finger 236 291 IPR019787 -
Car01g01151 718 SUPERFAMILY Homeodomain-like 492 553 IPR009057 -
Car01g01151 718 MobiDBLite consensus disorder prediction 438 488 - -
Car01g01151 718 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 24 693 - -
Car01g01151 718 Coils Coil 670 690 - -
Car01g01151 718 MobiDBLite consensus disorder prediction 1 34 - -
Car01g01151 718 CDD PHD_PRHA_like 236 288 IPR045876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01151 Car-Chr1 11897551 11903364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01151 141 551 Homeobox Transcription Factor Family AT4G29940 59.479 1.68e-159 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Car01g01151 Homeodomain 6.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01151 - - gmx:100787118 999.579