Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01118 ATGGCTGCTGGTGAAAATGGTTCACTCTCACTTGACAATATCAAGAATGAGACTGTTGATCTGGAACGTATTCCAATTGATGAAGTGTTTGAGCAATTGAAATGTACCAGGGAAGGTTTGTCCACTGCAGAAGGAGAAAACAGGATTCAAATTTTTGGTCCAAACAAGCTAGAAGAGAAAAAGGAGAGCAAATTTCTGAAGTTTCTTGGGTTTATGTGGAATCCACTGTCATGGGTGATGGAAGCTGCAGCTGTAATGGCAATTGCTCTTGCAAATGGTGATCGACAGCCACCTGACTGGGAAGATTTTGTGGGAATTATTTGCTTGTTGGTTATCAACTCAACTATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCTGGTCTTGCTCCTAAGACAAAGGTTCTTAGAGATGGCAAATGGAGTGAGCAAGAGGCTGCAATTCTAGTCCCAGGAGACATCATTAGCATCAAACTTGGTGACATTATTCCGGCCGATGCTCGTCTTCTAGAAGGCGATCCTTTAATGGTTGATCAAGCAGCATTGACAGGAGAATCACTTCCTGTGACAAGACATCCAGGTCAAGAAGTTTTCTCAGGTTCAACTTGCAAACAAGGAGAAATCGAAGCCGTTGTCATCGCAACCGGTGTTCACACATTCTTTGGAAAAGCAGCTCATTTGGTTGACAGTACAAACAATGTTGGACATTTCCAAATAGTTCTTAAATCCATTGGAAACTTTTGTATTTGCTCCATTGCAGTTGGTATGGTGGTTGAGATTATAGTCATGTATCCTATCCAACATCGCAAATATCGTGATGGAATCGACAACCTTTTAGTCCTCTTGATTGGAGGAATTCCGATTGCTATGCCGACTGTGTTGTCTGTGACAATGGCTATTGGGTCTCACAAACTTGCTCAACAAGGTGCTATCACAAAGAGAATGACTGCCATTGAAGAAATGGCTGGTATGGATGTTCTTTGCAGTGACAAGACAGGAACACTCACACTTAACAAATTGAGTGTTGATAGGAACTTGATTGAAGTCTTTGCAAAGGGTGTGGATAAGGAACATGTCATCCTTTTGGCTGCAAGGGCTGCTAGGACTGAAAATCAAGATGCTATTGATGCTGCTATTGTTGGAATGCTTGCTGACCCGAAAGAGGCGAGAGCGGGGATAAGAGAGGTGCATTTCTTTCCATTCAATCCTGTTGATAAGAGAACTGCTTTGACATATGTTGATGGTGATGGAAGTTGGCATAGGGCTAGCAAAGGTGCTCCTGAACAGATCATGAACTTGTGTAACCTTAAGGATGATGCTAAGAAGAAAGTCCATGCTATTATTGAAAAGTTTGCAGAAAGAGGGCTGCGTTCACTTGGTGTTGCTAGACAGGAAGTTCCGGAGAAAACAAAGGAAAGTGCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCAGTGTTTGATCCTCCTAGGCATGACAGTGCTGAAACCATTAGGAGAGCTCTTAATCTTGGTGTCAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAGACTGGTAGGAGACTTGGTATGGGAACCAATATGTACCCATCTTCTACCTTGCTTGGTAATGACAAAGATGCAAATATTGCTTCAATTCCAGTTGAAGAGTTGATTGAGAAGGCAGATGGATTTGCTGGAGTTTTTCCAGAACACAAATATGAAATTGTGAAGAAGTTACAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCACCTGCATTGAAAAAAGCAGATATTGGAATTGCTGTTGCTGATGCAACTGATGCTGCAAGAGGTGCTTCTGATATAGTCTTGACAGAACCTGGATTGAGTGTTATCATCAGTGCTGTGTTGACAAGTAGAGCTATTTTCCAAAGAATGAAGAACTACACGATCTATGCTGTGTCTATCACTATCCGTATAGTGTTTGGCTTCTTGTTAATTGCACTGATATGGAAGTTTGACTTCTCTCCATTCATGGTTTTGATTATTGCCATTTTAAATGATGGAACAATCATGACAATTTCAAAGGACAGAGTTAAGCCATCTCCAATGCCTGATAGCTGGAAACTTAGAGAAATATTTGTTACTGGTATAGTGCTTGGAGGTTACTTAGCAATGATGACTGTGATATTCTTCTGGGTGGCGAAAGACACTAAGTTCTTTCCGAACAAGTTCGGAGTTAGAGATATTCATGACAATCATGATGAGTTAACAGCTGCTTTGTATCTACAAGTTAGTATAGTTAGTCAGGCTTTGATCTTCGTTACCCGTTCGCGTAGCTGGTCTTATGTCGAACGCCCCGGGATGTTGCTAATGGGTGCTTTCCTCACTGCTCAACTGATTGCTACATTAATAGCAGTATATGCCAATTGGGGATTTGCAAGGATCCATGGAATTGGTTGGGGTTGGGCAGGAGTGATATGGCTGTATAGTATTATCTTCTATCTTCCTCTTGACGTCATCAAGTTTTTCATTCGCTATTTATTGAGTGGTAAAGCTTGGCAAAATCTTCTGGAAAACAAGACTGCCTTTACTACTAAGAAAGATTATGGAAAAGAAGAGAGGGAAGCTCAATGGGCACTTGCTCAAAGGACACTTCATGGACTTCAACCACCAGAAACTTCAAGTGTGTTCAATGAGAAGAGTAGTTATAGAGAATTGTCTGAGATTGCTGAGCAAGCTAAGAGACGTGCTGAAGTTGCTAGGCTTCGTGAGCTTCATACACTTAAAGGGCATGTTGAATCTGTTGTGAAGCTAAAAGGGCTGGACATAGACACTATACAACAACATTATACTGTGTGA 2871 0.4152 MAAGENGSLSLDNIKNETVDLERIPIDEVFEQLKCTREGLSTAEGENRIQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAVMAIALANGDRQPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLMVDQAALTGESLPVTRHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQIVLKSIGNFCICSIAVGMVVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVDKEHVILLAARAARTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYVDGDGSWHRASKGAPEQIMNLCNLKDDAKKKVHAIIEKFAERGLRSLGVARQEVPEKTKESAGAPWQFVGLLSVFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSTLLGNDKDANIASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFVTGIVLGGYLAMMTVIFFWVAKDTKFFPNKFGVRDIHDNHDELTAALYLQVSIVSQALIFVTRSRSWSYVERPGMLLMGAFLTAQLIATLIAVYANWGFARIHGIGWGWAGVIWLYSIIFYLPLDVIKFFIRYLLSGKAWQNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSSVFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01118 956 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
Car01g01118 956 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
Car01g01118 956 Gene3D - 905 956 - -
Car01g01118 956 SFLD C1.7: P-type atpase like 316 644 - -
Car01g01118 956 Gene3D - 331 630 IPR023214 -
Car01g01118 956 Pfam Cation transporter/ATPase, N-terminus 24 86 IPR004014 -
Car01g01118 956 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 39 811 IPR006534 GO:0008553|GO:0016021|GO:0120029
Car01g01118 956 Coils Coil 907 927 - -
Car01g01118 956 SUPERFAMILY HAD-like 330 640 IPR036412 -
Car01g01118 956 CDD P-type_ATPase_H 39 846 IPR006534 GO:0008553|GO:0016021|GO:0120029
Car01g01118 956 Gene3D - 99 820 - -
Car01g01118 956 PANTHER CALCIUM-TRANSPORTING ATPASE 7 936 - -
Car01g01118 956 Gene3D - 137 221 - -
Car01g01118 956 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
Car01g01118 956 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Car01g01118 956 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Car01g01118 956 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Car01g01118 956 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Car01g01118 956 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Car01g01118 956 Pfam E1-E2 ATPase 136 314 - -
Car01g01118 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 568 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01118 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 106 353 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01118 956 PANTHER PLASMA MEMBRANE ATPASE 7 936 - -
Car01g01118 956 Gene3D - 346 493 IPR023299 GO:0000166
Car01g01118 956 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Car01g01118 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 852 IPR023298 -
Car01g01118 956 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01118 956 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01118 956 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01118 956 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01118 956 PRINTS H+-transporting ATPase (proton pump) signature 765 786 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01118 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Car01g01118 956 SFLD p-type atpase 316 644 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01118 Car-Chr1 11249061 11259149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01118 10 956 Primary Pumps ATPases AT4G30190 84.184 0.0 1639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01118 K01535 - gmx:100804422 1706.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01118 01 11249061 11259149 Car01g01118 01 11249061 11259149 ECH
Car07g00273 07 2507179 2514769 Car01g01118 01 11249061 11259149 PCT