Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01115 ATGTCAACCACAGATGCTGTTACAATTGAGGTTGTTCTAATCATAGTAGTAGTTGCTGTTAAGGTAGCTATTGTGGTTTGTGTGTGTAGAAAAAGAAATCAAATAAATGTTGCATCTGTTAGTCCAAATTCACAGTTCATAACACTCACTATGGATAAATTTCTGAATGACATGGAAAGGGAAAAACCAATAAGATTCACTGGTCAACAGTTAAGGATTGCAACAGACAATTATTCTAACTTGTTGGGGTCAGGTGGATTTGGAACAGTTTACAAAGGAATTTTTAGTAATGGAACAATTGTAGCTGTCAAGGTTTTACGCGGTAACTCCGACAAGAAAATcgacgaacaatttatggcagaggttggaacaattggtagaattcatcatttcaatcttgttaggctatatggattttgttttgaaagaaacttgatagcacttgtttatgaatatatggaaaatggatcacttgataggtatttgtttcatgaaaagaagactttaggatatgaaaaacttcatgagattgcaataggtactgcaagaggcattgcttacttgcatgaagaatgccaacaaagaataatccactatgatataaaaccaggaaatattcttctagacaagaatttctatcctaaagttgctgattttggtttggccaaactttgtaataaggataatactcatataactatgacaggaggaagggggactccaggttatgctgcacctgagctttggatgccatttcctataactcacaaatgtgatgtttatagttttggtatgttgttatttgaaattattggtaggagaagaaacCTTGAAATTGAAAATAGTGAAAGTCAAGAGTGGTTTCCAATTTGGGTATGGAAAAAATTTGATGGTGGACTATTGGAGGAAGCAATGATAGTTTGTGGAATAGAGGAGAAAAATAGGGAAATTGCTGAGAGAATGGTTAAGGTAGCTTTATGGTGTGTTCAATATAGGCAAGAGTTAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCATTAGAAATTCCAAAGATTTTTAACCCTTTTCAACATTTGATTGATGGGAATTTTGCTACTCATGGAGTTCAAGTGTCACATACTTATACAACTAGTGTTTCTTCTTATGGATCTTCTGTTATGATGAGTGATTCAAGCATTGTGTGTGCTACTCCTATTATGAAGAAGTATGAGATTGAATTGGCAACTAGCATAGGGTGA 1248 0.2163 MSTTDAVTIEVVLIIVVVAVKVAIVVCVCRKRNQINVASVSPNSQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTIVAVKVLRGNSDKKIDEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMENGSLDRYLFHEKKTLGYEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPGNILLDKNFYPKVADFGLAKLCNKDNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLEIENSESQEWFPIWVWKKFDGGLLEEAMIVCGIEEKNREIAERMVKVALWCVQYRQELRPIMSVVVKMLEGSLEIPKIFNPFQHLIDGNFATHGVQVSHTYTTSVSSYGSSVMMSDSSIVCATPIMKKYEIELATSIG 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01115 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Car01g01115 415 SUPERFAMILY Protein kinase-like (PK-like) 59 347 IPR011009 -
Car01g01115 415 Gene3D Phosphorylase Kinase; domain 1 50 152 - -
Car01g01115 415 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01115 415 Gene3D Transferase(Phosphotransferase) domain 1 153 355 - -
Car01g01115 415 PANTHER PUTATIVE-RELATED 11 412 - -
Car01g01115 415 Pfam Protein kinase domain 80 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01115 415 SMART serkin_6 76 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01115 415 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 412 IPR045874 GO:0004672
Car01g01115 415 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01115 Car-Chr1 11182647 11184152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01115 65 364 Receptor kinase-like Gene Family AT5G38280 42.089 6.11e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Car01g01115 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01115 - - gmx:100803355 657.136