Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01110 ATGGTTGATGAGAATATGAAGAGAAGCAACTTTGAAGTGTTGGGAATGTGTTGTGCTACAGAAGCATCACTGGTTGAAAGAATTCTAAAGCCACTTCATGGTGTCAAAGATGTTTCAGTGATTGTTCCTACTAGAACAGTTACTGTGGTCCATGATGTTCTCTTTATTTCTCAGTCACAAATAGCTGATGCACTGAATAATGCAAGTCTTGAAGCTAGTTATAGACCCCATGGAGAGTCCAATAATATTGAAAAGAAATGGCCAGACTTTCCTACAATGGCATGTGGCTTGTTACTTGTACTTTCATTTTTGAAGTACCTATATCCTTCTTTGGAATGGTTGGCTCTTGGTTCTGTTGCTATTGGATTCCCTAAAGTTCTATTCAGAGCTATAGCTTCAATTAAGGCTCTTACTCTTAATATCAACATTTTGGTTGTATTTGCAGTATGTGGTACTATTGCTATACAAGATTTTACAGATGGTGGAGTCATCATCTTTCTGTTTTCCATTGCTCAGTGGCTTGAGACAAGAGCAACTCACAAGGCAATGGTTGCAATGTCATCTTTAACAAACATGGCTCCTCAAATGGCCATCGCTGCCGAGACTGGTGAACGAGTCGATGTCAATGAGGTAAAGATCAACACCATCCTTGCAGTCAAGGCTGGTGAAGCTATTCCTCTTGATGGAGTTGTGGTGGATGGAAAGTGTGAAGTTGATGAAAAAATGTTAACAGGAGAATCCTTCCCTGTCACCAAAGAATCAGATTCACTTGTCTGGGCTGGAACTATTAATATGAATGGATATATAAGTGTAAGAACTATAGTGTTGGCAAAAGACACAGTGGTGGCAAAAATGTCAAGACTTGTTGAAGAGGCTTCTAGCAGAAAATCACAAGCACAAAGATTCATAGATAATTTTGCAAAATACTATATTCCTGTGGTTGTATTGATTTCAGCTAGCATTGCTGTGGTTCCAGCTGCAATAAGTGTTCCTGACATTGAGCCTTGGTTTCATCTATCACTTGTGGTTTTATTAAGTGGATGCCCTTGTGCTCTTATCCTCTCCACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGATTACTATTGAAAGGTGGTGATTATCTTGAAACACTTTCTAGGATTAAGACAGTGGCTTTTGATAAAACAGGTACCATAACAAGAGGAGAGTTTAGTGTAACAGATTTTAGTGGTACAGATGACATTGACAATGAAACCATATTGTACTGGATTTCAAGTATTGAGAGTAAATCAAGTCATCCAGTGGCAGCTGCACTAGTGGAATATGGAATGTTGCACTCTATCAAACCAGTTCCAGAAAATGTGGAGAATTTTCAAAATTTTCCAGGGGAAGGAATTTTTGGTACAATTGATGGGAGGGATATCTATATAGGAAATAGAAGAATTGGTATCAGAGCACAATCTGAAAGAGTTGATTGCCAATTGCAATTTCAAAGCAATGAGATTTCTGCCAAGAAACAGTACTGTGGACAAACTCTAGTTGGAGTCTTCAGCCTAGTTGATGCTTGCAGATCAGGTGCTTTAGAGGCAATAGAAGAGCTAAAGTTATTGGGTGTGAGATCAGTTATGCTGACAGGAGATAGCTCTCAGGTTGCTATGTATGTTCAGAGTCAGTTAAACCATGCTATAGACATTGTTCATGCAGAGCTTCTACCTCATGAAAAAGCAACAATCATTGAAAATCTGAAAAAACAAGGGCCAACAGCCATGATAGGAGATGGCATAAATGATGCACCTGCATTAGCCACAGCTGACATAGGAATCTCAATGGGAATATCAGGTTCAGCTCTTGCAAATGAAACAAGCAACGCAATTCTCATGTCGAACGACATCCGAAAAGTACCCGAAGCGATTCGTCTAGCAAGAAAAACAACTAGAAAGCTCATTGAGAATGTCATTATTTCAGTTGGATTCAAATGTGCCATACTTGCATTGGCAATTGCAGGATATCCATTGGTTTGGCTTGCTGTGTTGACTGATGTTGGAACATGTTTGTTTGTGATTCTCAATAGCATGTTGATTTTACAAGAGAATAAAAAAGATGAAAGTGAATCTTCAACAAGGTCTAATAAATATGGAAACTTTTTGGAAGTTAATGTTGATGTGAGAAAAGGACTTCTTAGTGATGAAAAGTGTGGTAAAGGGTGTTGTAAAAATGTTACTGATCATGTGGAAACTACAAAGGCAAGAAAAATTGAATCTTGTGGAAATGATCATGGAAGTTATATGTTTGTTGAAGTTCATGTTGGGAAGCCTTGCAATGATTTATGTTTAGAAAAAGTTAAAATGTGTGATGAGGGTAAAATGGACAAATCCATTGATGATTTAGAGTTGTCTGAGACAAGTGGGATTGACGAGTGCTGCAAGAATAAATGCTGTAATGAATTTGTTGATGTTGATGTTGATGTTATTAGTAGCCTTGGTGGCAAGACAGAAATTATTATTGAGTGA 2505 0.3812 MVDENMKRSNFEVLGMCCATEASLVERILKPLHGVKDVSVIVPTRTVTVVHDVLFISQSQIADALNNASLEASYRPHGESNNIEKKWPDFPTMACGLLLVLSFLKYLYPSLEWLALGSVAIGFPKVLFRAIASIKALTLNINILVVFAVCGTIAIQDFTDGGVIIFLFSIAQWLETRATHKAMVAMSSLTNMAPQMAIAAETGERVDVNEVKINTILAVKAGEAIPLDGVVVDGKCEVDEKMLTGESFPVTKESDSLVWAGTINMNGYISVRTIVLAKDTVVAKMSRLVEEASSRKSQAQRFIDNFAKYYIPVVVLISASIAVVPAAISVPDIEPWFHLSLVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSRIKTVAFDKTGTITRGEFSVTDFSGTDDIDNETILYWISSIESKSSHPVAAALVEYGMLHSIKPVPENVENFQNFPGEGIFGTIDGRDIYIGNRRIGIRAQSERVDCQLQFQSNEISAKKQYCGQTLVGVFSLVDACRSGALEAIEELKLLGVRSVMLTGDSSQVAMYVQSQLNHAIDIVHAELLPHEKATIIENLKKQGPTAMIGDGINDAPALATADIGISMGISGSALANETSNAILMSNDIRKVPEAIRLARKTTRKLIENVIISVGFKCAILALAIAGYPLVWLAVLTDVGTCLFVILNSMLILQENKKDESESSTRSNKYGNFLEVNVDVRKGLLSDEKCGKGCCKNVTDHVETTKARKIESCGNDHGSYMFVEVHVGKPCNDLCLEKVKMCDEGKMDKSIDDLELSETSGIDECCKNKCCNEFVDVDVDVISSLGGKTEIIIE 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01110 834 Gene3D - 3 74 - -
Car01g01110 834 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Car01g01110 834 SFLD Haloacid Dehalogenase 373 642 - -
Car01g01110 834 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 6 740 - -
Car01g01110 834 SUPERFAMILY Calcium ATPase, transmembrane domain M 141 384 IPR023298 -
Car01g01110 834 Gene3D - 179 293 - -
Car01g01110 834 Gene3D - 381 640 IPR023214 -
Car01g01110 834 SUPERFAMILY HAD-like 388 690 IPR036412 -
Car01g01110 834 Pfam haloacid dehalogenase-like hydrolase 386 603 - -
Car01g01110 834 SUPERFAMILY Calcium ATPase, transduction domain A 204 289 IPR008250 -
Car01g01110 834 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 509 669 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01110 834 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 163 411 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01110 834 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 6 740 - -
Car01g01110 834 SFLD p-type atpase 373 642 IPR044492 -
Car01g01110 834 CDD HMA 11 73 IPR006121 GO:0046872
Car01g01110 834 Gene3D - 401 521 IPR023299 GO:0000166
Car01g01110 834 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Car01g01110 834 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Car01g01110 834 PRINTS P-type cation-transporting ATPase superfamily signature 513 524 - -
Car01g01110 834 PRINTS P-type cation-transporting ATPase superfamily signature 535 545 - -
Car01g01110 834 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Car01g01110 834 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Car01g01110 834 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 141 691 IPR027256 GO:0006812|GO:0016021|GO:0019829
Car01g01110 834 CDD P-type_ATPase_HM 96 691 - -
Car01g01110 834 ProSitePatterns Hypothetical cof family signature 2. 589 611 - -
Car01g01110 834 SUPERFAMILY HMA, heavy metal-associated domain 3 76 IPR036163 GO:0046872
Car01g01110 834 Pfam E1-E2 ATPase 199 368 - -
Car01g01110 834 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Car01g01110 834 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 141 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01110 Car-Chr1 11128099 11133633 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01110 1 757 Primary Pumps ATPases AT4G30110 56.827 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01110 K01534 - gmx:100815324 1191.02