Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01076 ATGGCTTCTTCTTTTCCTCTTTATCAACCAACACCATGCTTCTTTTCAAATACCCAGTTCAAAGGTTTGCGCCATGGCTGTTTGTGGCGACCCACTTACTCCTTTGCCTCTTCTGCTCAAAACAAAGTAAAACCTGTTCAATCTTCGGTTGATGCTGCCCCATTTCCCTTGTTACAGCCACCTCAAGTTGAAGAATCATCCTCTGAGTTGGAGCCTGTGGATCCTGATTTCTACAAGATAGGATTCGTCCGAAGCATGCGAGCTTATGGAGTTGATTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCTAAAGATGTTGAACCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCCTTGGCCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTGGGATTTAAGATTAGCATGCCTTCTCTTGTTTGCGTTTGACTGCAAAGACAACTTTTGGCAGTATTACGGCGATTTCTTACCAAGTGCAGATGAGTGCACTAGCTTACTTCTAGCTACTGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCCTCTACTATGAGAACTCAGCAACAACGAGCCTTAAAATTCTGGGAGAAGAACTGGGTAAAGAGAAAATTGTCCTTGTTCAAAATTCATAGTGGTGCGCCCCTAAAAGTAAAACGTCTTGCTCGTGATTCTCAAAGGTTCATTTGGGCTGTAGGAATCGCACAGTCACGATGTATCAACATGCAAATGAGAATGTGTGCACTAACTCAAGATGCAAATATGCTGATTCCGTATGCCGATATGCTGAACCATTCTTTCGAGCCGAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACATATTAGAAAGGGAGATGCGATGACAGTTGATTACATGAGTGCACAGAAGAATCACATGTTAATGCAAAGATATGGATTTTCATCGCCAGTGAATCCTTGGGATGTGATCAAATTCTCAGGCAATGCACAAATCCATTTGGATTCCTTCTTGTCAGTCTTCAACATATCTGGTCTTCCTGAAGAGTATTATCGTAACGAAGTTCTATCAAACGCTGGAGATACTTTTGTCGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCGACGTGGTCAGATGGAGATTTGCCTCCAATCCCAAGTACAGAAAGGAAGGCTGCAAAGGCATTACAAGAAGAGTGCAAACAAATGCTTGCAGAATTTGCTACCACCTCTAAACAAGACCAGAAATTTTTAGATTCATCACCAGAATCGACGAGAACTCTTGATGCTGCAATAAAGTACAGATTGCACAGAAAATTGTTACTGGAAAAAGTTATCCTAGCATTGGAGATCTATCAAGAACAAATACTGTTCTGA 1479 0.4185 MASSFPLYQPTPCFFSNTQFKGLRHGCLWRPTYSFASSAQNKVKPVQSSVDAAPFPLLQPPQVEESSSELEPVDPDFYKIGFVRSMRAYGVDFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLACLLLFAFDCKDNFWQYYGDFLPSADECTSLLLATEEELLELQDPDLASTMRTQQQRALKFWEKNWVKRKLSLFKIHSGAPLKVKRLARDSQRFIWAVGIAQSRCINMQMRMCALTQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQHIRKGDAMTVDYMSAQKNHMLMQRYGFSSPVNPWDVIKFSGNAQIHLDSFLSVFNISGLPEEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSDGDLPPIPSTERKAAKALQEECKQMLAEFATTSKQDQKFLDSSPESTRTLDAAIKYRLHRKLLLEKVILALEIYQEQILF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01076 492 Coils Coil 427 447 - -
Car01g01076 492 Pfam SET domain 99 332 IPR001214 GO:0005515
Car01g01076 492 Pfam Rubisco LSMT substrate-binding 421 473 IPR015353 -
Car01g01076 492 Gene3D set domain protein methyltransferase, domain 1 81 347 - -
Car01g01076 492 SUPERFAMILY SET domain 98 348 IPR046341 -
Car01g01076 492 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 344 484 IPR036464 -
Car01g01076 492 CDD SET_LSMT 90 347 - -
Car01g01076 492 ProSiteProfiles SET domain profile. 78 333 IPR001214 GO:0005515
Car01g01076 492 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 51 480 - -
Car01g01076 492 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 480 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car01g01076 SET 7.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01076 - - cam:101505820 996.497