Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01065 ATGGCATCTTCTGAAGTTGAAATTGCGTCTTCTTCTCCATTTGGTTGTGTTTTAAGGGACCGTAATCATCGTGATGGATGCAGAGAAAGTAATAAAGTTAAAACTACACATGCTGCTTTTCAAAGGAACATTAAGAATTTTGTCATGGATCATCTTAACACGTGCATGTCCATGTCTTCTGATTCTGCTACAACAAATGAAAACAACGTCAACAATAACAATGAGGATCAAATGAGTAACAACAACAATGATTCTTGTTGGGTTTCGAAAGCTAGCAATAATCTTGCAGGGCTTCGTTTGTCAAAATACAATCTTAACAATGACAATAACATCATTAACAAGGATGATAAAGATGAATCATCCTTGGCTTCTTTGATTAGCCCGAGACATTCACGCCTTCTTGATCGGTGGGCTGCGAGGCAAGCTCGTGAGATGGTGTCGACGTTGGAGAATGAAGCTGAGTTATTGTCTATTGACAATAACACCAACAACAACATGCCTTCATTTGCAAGGACATCTAGTTCTATCTCGGATGAATGTTCTTCGGAGATATCGAACCTTGGTGCGTCTTCCCTTGTTCAGATATGGGAAAAGAGGCTTAACAAATCAAGTGGATCCAAACCCAACATCCCACTTGAGAAAAcaagttcaaatggaagtacaattgcaacttgcaatAATGAGAATGTGTTTGTTGTAGTGGAAGAACAAAGAGGGTCGGAACTAGGAGAGTGTTTAGAAGGACAGTTATCAGGGAACGAAGAAACATTTTCTTCGTTCCCTGATTGGGAGTCTGATAAGACTTGTGATCAAAGTAGGTGGTGTTCTTCTGAGAGTGATAGAGTCAGTGTTGCTGATATCATAAAGAGACTCACCGCTACGAGTCAAAGTCAGAGTCCACCTCCATCTTTTGCTGATGACAATGATCATGAAGGGTTTGGTAGTAGCAGTGCTGCAAGTTCTCCTTGTAGAGATTTTGCACCAGAACTTGTTTCAGACCAAAGAGCTTTTCCTCTGGTTACTCGTTCACTGCAACTTCGAGGGCGTCCAGCATTCAATGATTTGCTTATGCAGTTCGAGAATGATAGGCATGGAGAGCTAAAGAACCTTGCTGAACGAGGAACTGTCTCCAAGTTCTCACAACGAGGTCGCATTCAGGCATTACTTCGACTTAAATTATTACAACGTAGCATGGCAGCTAACGTTCTATCGCACCAGAAATCAGAATCATCTGAAGTAAACAGACAAGTACAACCACATGGATCTTCAATTATGCAACTAAGGGAAAAATTTAGCACTGGAGTTGAACAAAGTAGTAGAGTCCATGCAGAAGTAGCTAACACAAGAAGTCGTCGCAGCGAGATATTAAACAACATCACGCAATTGGAAAACTCATCCACTTCAGATCAATTCAGTAAAGACACAAGCAGCCAGATTTCTCATAGCTCTGCCAGTCACTCCATAGAATCAACAAAAAATTCGGTGTCTCAGACGAGTGAAAAACATCGTCCAAGTTCAAATGCCATGTCCCAAGGAACATGTTTTGAGGTTCAGCATGATTACTCCAAGGAAACTTCTGAGGCAACAACATCAATGATCGACTCAAATGTTAATGAGAACGAGGAAGAGGTGATTAACCAGCAATATGATGAAACAAGTTATGATTGTGCAGTAGAAGAGGAGGGAAGTAACCAAAACTATGCTGAAAGCAGTTCTGAAGAGATGGAGGAAGAGTTAGAGGATTATGATGAAAGTAGGTATGACTGGATCAGCGAAATTTCCCGGCCGAGGAGTTATTGGGAAGAGAGGAGGCAAGCTTGGTATAGAGAGATGCTTGACACTGGTTATCCAAATGAGGATATACAGGTTCTTCTTCAAAGACGAACAGTGTCAACTTACCTTTCTAGCGATTTTCACGAAACAATGGATAGATTGATGCAATCTCATAAGGTAACACAAACACATTTAGTGAGTAGTCAAGATAATGAGGGAGACAATCAAGGGTTGATAGCGTTTTTACAAGAACGCCTACATCCCAAAATAACTCCTCAAGAAAATGGAATAGAGACAAACGAGGAGGAAAGGGTAAATGGggaagaggaggaggaggagaaagataagcaagataatgaagaggagcaagaaggggagAGTTTGACAAGTAGTTTGTATCATGAAGTTGGAGACTATTCAAATCAATCCTCATCATGGAGTTATAGAGACAATGAAGCTGCTGATGATTTTGATAGAGTTGCTTCTACATCTTCACAACCTTTTCATTCTCCGCCTTTCTATCGTGATAATCAGCGAAACTCTTCATCCATCAATCCTCATTCAATTGAAATGGAACTCATATATGATTTAAGAGGCCATATGGAGCAACTTTATCAAGAAATGTCTGAACTAAGGACATCAATAAAGAGTTGCTTGGATATGCAAATGCTGATACAGTTACAACAATCCATGAACCAAGAGGCTCAAAAAGTTGAAAAAGAAGAAAAGAAGTCACATAACAAGGCTGGTAAGAAAGGCGATTGTTGCATATGCTATGAGATGAAAGTTGACTCAGTTCTATACAGGTGTGGACACATGTGTGCATGTATGAAGTGTGCCAGTGAGTtacaatgtaacaatggaaaatgtccaatatgtcaatctaaaatagacgatgtTATTCGAGTATACGTTGATGCTTAG 2697 0.3804 MASSEVEIASSSPFGCVLRDRNHRDGCRESNKVKTTHAAFQRNIKNFVMDHLNTCMSMSSDSATTNENNVNNNNEDQMSNNNNDSCWVSKASNNLAGLRLSKYNLNNDNNIINKDDKDESSLASLISPRHSRLLDRWAARQAREMVSTLENEAELLSIDNNTNNNMPSFARTSSSISDECSSEISNLGASSLVQIWEKRLNKSSGSKPNIPLEKTSSNGSTIATCNNENVFVVVEEQRGSELGECLEGQLSGNEETFSSFPDWESDKTCDQSRWCSSESDRVSVADIIKRLTATSQSQSPPPSFADDNDHEGFGSSSAASSPCRDFAPELVSDQRAFPLVTRSLQLRGRPAFNDLLMQFENDRHGELKNLAERGTVSKFSQRGRIQALLRLKLLQRSMAANVLSHQKSESSEVNRQVQPHGSSIMQLREKFSTGVEQSSRVHAEVANTRSRRSEILNNITQLENSSTSDQFSKDTSSQISHSSASHSIESTKNSVSQTSEKHRPSSNAMSQGTCFEVQHDYSKETSEATTSMIDSNVNENEEEVINQQYDETSYDCAVEEEGSNQNYAESSSEEMEEELEDYDESRYDWISEISRPRSYWEERRQAWYREMLDTGYPNEDIQVLLQRRTVSTYLSSDFHETMDRLMQSHKVTQTHLVSSQDNEGDNQGLIAFLQERLHPKITPQENGIETNEEERVNGEEEEEEKDKQDNEEEQEGESLTSSLYHEVGDYSNQSSSWSYRDNEAADDFDRVASTSSQPFHSPPFYRDNQRNSSSINPHSIEMELIYDLRGHMEQLYQEMSELRTSIKSCLDMQMLIQLQQSMNQEAQKVEKEEKKSHNKAGKKGDCCICYEMKVDSVLYRCGHMCACMKCASELQCNNGKCPICQSKIDDVIRVYVDA 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01065 898 PANTHER BNAC05G24000D PROTEIN 1 897 - -
Car01g01065 898 PANTHER BNAC05G24000D PROTEIN 1 897 - -
Car01g01065 898 SUPERFAMILY RING/U-box 845 890 - -
Car01g01065 898 CDD mRING-HC-C3HC5_NEU1 846 884 - -
Car01g01065 898 ProSiteProfiles Zinc finger RING-type profile. 846 885 IPR001841 -
Car01g01065 898 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 819 897 IPR013083 -
Car01g01065 898 MobiDBLite consensus disorder prediction 694 716 - -
Car01g01065 898 MobiDBLite consensus disorder prediction 752 776 - -
Car01g01065 898 MobiDBLite consensus disorder prediction 460 512 - -
Car01g01065 898 Coils Coil 691 713 - -
Car01g01065 898 MobiDBLite consensus disorder prediction 60 79 - -
Car01g01065 898 Coils Coil 139 159 - -
Car01g01065 898 Coils Coil 812 835 - -
Car01g01065 898 Coils Coil 445 465 - -
Car01g01065 898 Pfam Zinc finger, C3HC4 type (RING finger) 843 891 - -
Car01g01065 898 MobiDBLite consensus disorder prediction 292 321 - -
Car01g01065 898 MobiDBLite consensus disorder prediction 680 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01065 Car-Chr1 10326487 10331212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01065 838 894 C3H Transcription Factor Family AT3G06140 33.333 3.47e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01065 - - mtr:MTR_2g437720 1159.44