Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01048 ATGGGTACACAGAGGAAGAGGAAGGTGAGTTTATTCGACGTCGTGGACGACTCTGCAGCTAAGATGGTGAGAACTTACAGCGTTTCAATCGGTAACAGCCTTATAAACCCATGGAACGGTAAAGCTTACTCTCAAAGATACTATAAAATTTTGGAGAAGAGGAAAACCCTACCTGTTTGGCACCAGAAAGAGGATTTCTTGCAGGTTTTGAGGGATGACCAGACTTTGATTCTCGTTGGTGAGACTGGTAGTGGAAAAACCACACAGATCCCTCAGATTGTTTTGGAAGCTGTTGAATTAGAGACAGCTGATAAACACAAGAAGATGATGATTGCATGCACTCAGCCTCGTAGAGTGGCTGCACTGTCTGTTTCTCGCCGTGTGGCCGAAGAGATGGATGTGAGTATTGGTGAAGAGGTTGGTTATAGCATCAGATTTGAAGATTGTAATAGTGCAAGGACTGTTTTGAAGTATCTAACATATGATATGTTTTTGAGAGAAGCAATGACGGATCCACTTTTGGAACGATACAAAGTAATTATTCTTGATGAGGCACATGAAAGGACTTTGGCTACTGATGTGCTATTTGGCCTTCTAAAGGAAGTTCTTAAAAACAGACCTGACTTGAAGGATTACTTGGAGGCTGCTATTAGGACAGTGGTGCAGATTCACATGTGTGAACCTCCTGGAGACATACTTGTTTTTCTCACTGGAGAGGAAGAGAAAGAAGATGCATGCCGCAAAATATCTAAAGAAGTTGCAAATTTGGGGGATCAGGTGGGCCCTGTGAAAGCAGTACCATTGTATTCTACTCTTCCCCCAGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCAGTAAAAGAGGGAGGCCCCGCTGGAAGGAAGATTGTGAATGATTTGTTTGAGGATAGCCTTAGAGCTGTAGGAATTCAAGGAGTAGAAGCCGTCACAAAGTTGTATGTTTCCAACTTGGACCGCGGAGTAACCAATGAAGATATAAGGGAACTTTTCTCTGAGCTTGGAGAATATGGCACCATTATTAGTGATGTTTTGATGAGAGATGCAGATGGTAGGTCGAAGGGTTTTGGTTTTGTCAATTTCGAAAACCCAGACAATGCTGCTAATGTTGTGGAGGCATTGAATGGGTGTCCTGATTATGATTCTGGGAATAGTGGTCCCACATATTGTGGTGTCCTTGAGAAGTGGACTGTGGGATTAGATTTTTTGTGGAGGAAACTCTCCAGCCTTTGTCGTGGCAGCTGTTGCAGCCCTTATGAGTGGGCTCTTCGCTGA 1299 0.438 MGTQRKRKVSLFDVVDDSAAKMVRTYSVSIGNSLINPWNGKAYSQRYYKILEKRKTLPVWHQKEDFLQVLRDDQTLILVGETGSGKTTQIPQIVLEAVELETADKHKKMMIACTQPRRVAALSVSRRVAEEMDVSIGEEVGYSIRFEDCNSARTVLKYLTYDMFLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEKEDACRKISKEVANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPVKEGGPAGRKIVNDLFEDSLRAVGIQGVEAVTKLYVSNLDRGVTNEDIRELFSELGEYGTIISDVLMRDADGRSKGFGFVNFENPDNAANVVEALNGCPDYDSGNSGPTYCGVLEKWTVGLDFLWRKLSSLCRGSCCSPYEWALR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01048 432 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 210 - -
Car01g01048 432 SMART rrm1_1 320 399 IPR000504 GO:0003723
Car01g01048 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Car01g01048 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 288 IPR027417 -
Car01g01048 432 SUPERFAMILY RNA-binding domain, RBD 318 385 IPR035979 GO:0003676
Car01g01048 432 Pfam AAA domain 73 188 IPR003593 -
Car01g01048 432 Gene3D - 313 394 IPR012677 -
Car01g01048 432 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 238 IPR014001 -
Car01g01048 432 SMART ultradead3 54 235 IPR014001 -
Car01g01048 432 PANTHER ATP-DEPENDENT RNA HELICASE 1 210 - -
Car01g01048 432 PANTHER ATP-DEPENDENT RNA HELICASE 210 312 - -
Car01g01048 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 384 IPR000504 GO:0003723
Car01g01048 432 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 210 312 - -
Car01g01048 432 Gene3D - 12 220 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01048 Car-Chr1 10087083 10088768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01048 319 388 Eukaryotic Initiation Factors Gene Family AT4G34110 42.254 9.11e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01048 K12820 - gmx:100807162 494.582