Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01046 ATGGTGGATAACATTGGAGGTAGTTCATCTAACGACAATGGTGATTTTGTTATAAAGGAACAAGATAGGTTGCTTCCAATAGCCAATGTTGGTCGAATAATGAAACATATTTTACCTCAAAATGCAAAAATCTCGAAGGAATCGAAGGAAACGATGCAAGAATGTGTGTCGGAGTTTATAAGCTTTGTAACGAGTGAAGCTTCGGAGAAATGTAGGAAGGAAAGGAGAAAGACAGTGAATGGTGATGACATTTGTTGGGCTTTAGCAACACTTGGTTTTGATGATTATGCTGAGCCAATGAGAAGGTACTTGCATAGGTATAGAGAGTTAGAGGTTGATAAGATTAATAGTAATAATCAAGAAATTAGAGGAGGAAATGGCCCTCATGCATGA 393 0.3766 MVDNIGGSSSNDNGDFVIKEQDRLLPIANVGRIMKHILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDKINSNNQEIRGGNGPHA 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01046 130 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Car01g01046 130 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car01g01046 130 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 122 - -
Car01g01046 130 SUPERFAMILY Histone-fold 21 117 IPR009072 GO:0046982
Car01g01046 130 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Car01g01046 130 Gene3D Histone, subunit A 14 128 IPR009072 GO:0046982
Car01g01046 130 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Car01g01046 130 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Car01g01046 130 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01046 Car-Chr1 10077378 10078038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01046 16 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.566 8.69e-58 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car01g01046 CBFD_NFYB_HMF 9.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01046 K08065 - gmx:100794513 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01046 01 10077378 10078038 Car01g01046 01 10077378 10078038 ECH
Car07g00585 07 5110588 5111409 Car01g01046 01 10077378 10078038 PCT