Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01045 ATGTTCAAATTCTCTCTCTCCCTCAATGCTTTCGCCATTTCAACAACACTCTCCCATTTCCCCTTCCCATTTTCTCTCAAGTTCCTCACCACCACCGCAACTTCAAACTCCTTCGCCGTTTCCTACTTCATCAACAAATTCAACTTCTCACCAGAATTCGCACTCAAAGCTTCCAAACAGGTTCGTTTCAACTCCTCTCAAAAACCCGATTCAGTTCTCAACTTTTTCACAACCCACGGTTTCACTGACACAGACATGCAAAACATCATTAAAAGAGAACCATGGCTTCTTAACTGCGATACCCACAAAAGGGTTTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTCCCTCTGACATTGTTGGCATCGCTGTAGGTAACCCTAGATTCATGAAAACAAGTTTGAAGAATCGTGTTATTCCACTTTATAATTTAGTAAATCAATTCATCTGTTCTGATCAAAAGACACTTGCTTCTATTATTTCATGCCCTTCTTTGCTTTGTAGTGATTTTGTTGATTCTAATATCAAATTGTTGGTTGAAAATGGTGTTTGCAATTCTAGTATTTTTAGAATACTTCGTTCTAGACCTAGTATTATCTTTTGTAGTCCTAGAGAGTTAGCCGAGTCGGTTGAGGAATTGAAAAAATTGGGATTAAATCCTTCTATGTCATTCTTTGGTGATGCATTGCTTGCCAAGAGAGGTATAAGTGAATCCAAGTGGAATGAGAAGATTGATACTTTTAAGAAGTGGGGTTGGTCTGAGGAAACTATTTTGGAAGCTATTAGGAGACAGCCGAAGTGTATGCTTTCATCAAACGATAAAATCAATAGGGTGATGGAGTTTTGGGTTAATGAGTTAGGTTGGGATTCTTCTTACCTTGTTAAGGGACCAGGGATTTTTGGGTATGGTTTGGAGAAAAGGGTCATTCCGAGAGCAATGATCGTCCGCTATCTTCTAAATAAAGGCTTGAGAAGCGAGAGTGCTAGCTTGCTTACTCCATTTTACTTGTCTGAGAAATTGTTCTTGGAAAGGTATGTGTTGTGTTTTGAAGAGGAGGAAAAATCTTATCTATTGAAGTTATATTATGAAATGATGAAGGTGGAAAATGAGAAGGGACAGAAGAATCCTGAGTCATGA 1146 0.3857 MFKFSLSLNAFAISTTLSHFPFPFSLKFLTTTATSNSFAVSYFINKFNFSPEFALKASKQVRFNSSQKPDSVLNFFTTHGFTDTDMQNIIKREPWLLNCDTHKRVLPKFQFLLSKGASPSDIVGIAVGNPRFMKTSLKNRVIPLYNLVNQFICSDQKTLASIISCPSLLCSDFVDSNIKLLVENGVCNSSIFRILRSRPSIIFCSPRELAESVEELKKLGLNPSMSFFGDALLAKRGISESKWNEKIDTFKKWGWSEETILEAIRRQPKCMLSSNDKINRVMEFWVNELGWDSSYLVKGPGIFGYGLEKRVIPRAMIVRYLLNKGLRSESASLLTPFYLSEKLFLERYVLCFEEEEKSYLLKLYYEMMKVENEKGQKNPES 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01045 381 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 12 373 - -
Car01g01045 381 PANTHER CGI-12 PROTEIN-RELATED 12 373 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 SMART mt_12 159 187 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 SMART mt_12 192 222 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 Pfam mTERF 73 222 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 Pfam mTERF 238 344 IPR003690 GO:0003690|GO:0006355
Car01g01045 381 Gene3D Transcription termination factor 3, mitochondrial 136 361 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01045 Car-Chr1 10042221 10049122 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car01g01045 mTERF 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01045 K15032 - gmx:102667698 345.895