Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01043 ATGCGTCATTACAGCATCCACAACATCATCTTCAATTCCCACCATTGTACAACACTTAACCCCAAAAAAATTCCCCCTCTTTTCCCATTCCCATTCTCTCACAAATTGAAACTCTTcaccaccaccaccaccacTTCAGATTCCGAATCTGAACCAAACTCTTTCGTCGTTTCCTACCTCATCAACACCATCGGTTTCCCACGTGAAACAGCTCTCAAAGCATCAAAACGACTCCGTTTCAACTCCCCAGAAAAGCCCAATTCCGCGCTTCACCTTCCGACATTTCTCGATTGTTATCACATTGCTAGATTGCTTCTAACTAGACCAACTATACTTGGATCAAATGATTTTATCAATACTTTGGAGGAAGTTAAGGGTTTAGGGTTTGACCCTTTAACAACTACTTTTGGGATAGCTTTGGTTGCAAAGAAAAGTTTGAGTAAAACCCTTTGGGATGATAAAGTTGCTGTTTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTGTTAGAGCTTTTAGGGTTCAGCCTTTTTTGATGTTGGCTTCCATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAATTGGGTTGGAATTCTTTGGCACTTACTAAAAGGCCACAAATGTTTTGTATAAGTTTGGAGAGAAGGATCATTCCAAGGGCATTGGTTTTGCAATATCTTCAGATGAAAGGTTTGTGGAGAAAGAATGCAAGCTTAGTTACACCGTTTTCTTTGTCGGAGAAATTGTTCCTGAGCAAGTTTGTTGTCGGTTTTAAGGATGAGTCTGATTATCTATTGAAGCTTTATGAAGAAAAAATGAATCTTGCATACACCAAGGAGAAGAACACTGACATGAAAATCACCAAATAG 876 0.3767 MRHYSIHNIIFNSHHCTTLNPKKIPPLFPFPFSHKLKLFTTTTTTSDSESEPNSFVVSYLINTIGFPRETALKASKRLRFNSPEKPNSALHLPTFLDCYHIARLLLTRPTILGSNDFINTLEEVKGLGFDPLTTTFGIALVAKKSLSKTLWDDKVAVFKKWGWSDEDVVRAFRVQPFLMLASIDKINLVMSFWVNQLGWNSLALTKRPQMFCISLERRIIPRALVLQYLQMKGLWRKNASLVTPFSLSEKLFLSKFVVGFKDESDYLLKLYEEKMNLAYTKEKNTDMKITK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01043 291 Gene3D Transcription termination factor 3, mitochondrial 35 263 IPR038538 -
Car01g01043 291 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 100 280 - -
Car01g01043 291 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 19 91 - -
Car01g01043 291 PANTHER CGI-12 PROTEIN-RELATED 100 280 IPR003690 GO:0003690|GO:0006355
Car01g01043 291 PANTHER CGI-12 PROTEIN-RELATED 19 91 IPR003690 GO:0003690|GO:0006355
Car01g01043 291 Pfam mTERF 146 252 IPR003690 GO:0003690|GO:0006355
Car01g01043 291 SMART mt_12 201 232 IPR003690 GO:0003690|GO:0006355
Car01g01043 291 SMART mt_12 169 200 IPR003690 GO:0003690|GO:0006355
Car01g01043 291 SMART mt_12 102 130 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01043 Car-Chr1 10011714 10012910 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car01g01043 mTERF 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01043 K15032 - gmx:102667698 204.527