Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01040 ATGTTCAACTTCAATTCATGGCGCCACAAATCCCTTCTCTACTTCAAGATTGTAACTTTCTCACCAATATCCCAAAACCCATTACCCCTATCTCTCTATTTCTGCACCAACACTTCTCATTCAACCTCTTTTGCAGTTTCATACCTCATCCACAATTTTGGCTTCTCCCCACTATTTGCTAACAAACTTTGCTCCACTTACAGTGTTAAATTTAAGACCAACCAAAACCCTGATTTAGTTCTCACATTCTTTAGAAACCATGGTTTCTCAGATTCCCAACTACGTGATACCATTGCTAAGGCACCGTGGCTGCTTACCTGTGACCCCATCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTAACTCCGACATTGTTAACCTTGTCAGTATGAACCCTATGGTGCTCTGTTCAAGTCTGGAGAATCAAATAGTCCCAACCTATGAATTGGTTTATAGGTTTTTGAAATCTCACAAGGACACTATTGCTTGTGTAAATCATAATTCAACTTTCTTTGGAGACAGGCGTGTGGCATCTAACATCAGATTATTGACTGAGAATGGAGTGGCAGACTCTAACATTGCAAGAATGCTTAAGACCCATTGTCGGACATTGCAGACACGTGACATGCTGAAGTTGGTGGAGGAATTAAAGGATTTGGGTTTCAATCCTTCAAAAGCAACTTTTGGTGTAGCATTGAATGCCAAAACAACTGTACCCGAAGCCCGGTGGAAAGAGAAAGTTGATACCCTTAAGAAGTGGGGTTGGTCTGATGAAGATGTTCTGGTAGCATTTAGAACGCAGCCTTACTGTATGTTAGTATCCATTGATAAAATTAATTTAGTGATGAATTTTTGGATCAATCAGTTGGGTTGGGATGCTATGGCCCTTGTCAAAGGATCCTCAGTTTTTTTGTTAAGTTTGGAAAAAAGGATCATTCCAAGGGCCCAAGTAGTGCAATATCTGCTGAAGAAAGGTTTGCGAAAAAAGACTGCAAGCATGATTTATCCATTTGTAATGTCCGATAAGTTGTTTCTTGATATGTTTATAAAACGTTTTGAGGAGTCCTCTTATCTATTAAAGCTGTATGAGGAAAAATTAAATCTTGCATACACCACGGACAAAACTTGCTTGTCATGA 1155 0.3939 MFNFNSWRHKSLLYFKIVTFSPISQNPLPLSLYFCTNTSHSTSFAVSYLIHNFGFSPLFANKLCSTYSVKFKTNQNPDLVLTFFRNHGFSDSQLRDTIAKAPWLLTCDPIKRVLPKFQFFLSKGASNSDIVNLVSMNPMVLCSSLENQIVPTYELVYRFLKSHKDTIACVNHNSTFFGDRRVASNIRLLTENGVADSNIARMLKTHCRTLQTRDMLKLVEELKDLGFNPSKATFGVALNAKTTVPEARWKEKVDTLKKWGWSDEDVLVAFRTQPYCMLVSIDKINLVMNFWINQLGWDAMALVKGSSVFLLSLEKRIIPRAQVVQYLLKKGLRKKTASMIYPFVMSDKLFLDMFIKRFEESSYLLKLYEEKLNLAYTTDKTCLS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01040 384 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 21 376 - -
Car01g01040 384 Gene3D Transcription termination factor 3, mitochondrial 156 363 IPR038538 -
Car01g01040 384 Pfam mTERF 81 228 IPR003690 GO:0003690|GO:0006355
Car01g01040 384 Pfam mTERF 247 350 IPR003690 GO:0003690|GO:0006355
Car01g01040 384 PANTHER CGI-12 PROTEIN-RELATED 21 376 IPR003690 GO:0003690|GO:0006355
Car01g01040 384 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Car01g01040 384 SMART mt_12 131 166 IPR003690 GO:0003690|GO:0006355
Car01g01040 384 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Car01g01040 384 SMART mt_12 200 228 IPR003690 GO:0003690|GO:0006355
Car01g01040 384 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01040 Car-Chr1 9966833 9970802 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car01g01040 mTERF 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01040 K15032 - gmx:102663414 392.119