Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01033 ATGTTCGCTACACATCGCCATAGATCCCTTCTCCATCTCAACGCTCTAACTTTCTCACAATCCCTAAAACCTAACCCTCTTTTCTTACCATTTTCTCTCCATTTCTCCACCAACACTTCCGATTCACCATCATTTGCAGTCTCCTACCTCATCCACAATTTTGGCTTCTCCCCACTCTTAGCAAACAAACTTTGCTCCACTTACAGAGTTAAATTTAAGACTGCCCAAAACCCTGATTCAGTTCTCACTTTCTTTAGAAATCAAGGTTTCTCTGATTCCCAACTACGGGATACCATTGCAAAGGCACCATGGTTGCTTTCCTGCAACCCCCTCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTTAGTAAGAACCCTTTGCTCCTGTCTTCAAGTCTGGAGAATCAAATTGTTCCAGCCTATGAATTTGTTTATAGATTCTTGAAATCTCACAAGAACACTATTGCTTGTGCACGTGGAAATCCAAGTTTCTTTGGACACATTTATATGCCACGTAACATCAAATTGCTTATTGAGAATGGAGTAACAGATTCAAACATTGCAACATTGCTTCAGTTGTGGAGCAGGGCATTCAAATTGAGAACAACTGACACACTGAAGGTGGTGGAGGAATTAAAGGATATGGGGTTTAATCCTAAACAAACAATTTTCGCAGTAGCAATGGCTGCCAAAGCATCTCTAAGCAAAGCCCGGTGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATCAAGATGTTATGGAAGCATTTAGAAGGCAGCCTCATTGTATGTTAACATCCATTGATAAAATTAATTTAGTGATGGACTTTTGGGTTAATGAGTTGGGTTGGGATGCTCTGGCCATTGTCAAAAGACCAAGGGTTTTGGGGGCTAGTCTGGAGAGAAGGATCAAACCAAGAGCATCAGTTCTGCAATATCTTCTGAACAAAGGTTTGCTAAAAAAGAATGCAAGCTTAACTTATCCATTTGTAGTCGTTGATACTATGTTTCTTGACAAATATGTAAAACGTTTTAAGGAGGAATCTTCTTATCTGTTGAACCTTTATGAAGAAAAACTCAATCTTGCACATGCCAGGGACAAAACCAGCATGTCATGA 1167 0.3993 MFATHRHRSLLHLNALTFSQSLKPNPLFLPFSLHFSTNTSDSPSFAVSYLIHNFGFSPLLANKLCSTYRVKFKTAQNPDSVLTFFRNQGFSDSQLRDTIAKAPWLLSCNPLKRVLPKFQFFLSKGASNSDIVNLVSKNPLLLSSSLENQIVPAYEFVYRFLKSHKNTIACARGNPSFFGHIYMPRNIKLLIENGVTDSNIATLLQLWSRAFKLRTTDTLKVVEELKDMGFNPKQTIFAVAMAAKASLSKARWKEKVDAFKKWGWSDQDVMEAFRRQPHCMLTSIDKINLVMDFWVNELGWDALAIVKRPRVLGASLERRIKPRASVLQYLLNKGLLKKNASLTYPFVVVDTMFLDKYVKRFKEESSYLLNLYEEKLNLAHARDKTSMS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01033 388 Pfam mTERF 82 234 IPR003690 GO:0003690|GO:0006355
Car01g01033 388 Pfam mTERF 186 353 IPR003690 GO:0003690|GO:0006355
Car01g01033 388 Gene3D Transcription termination factor 3, mitochondrial 181 367 IPR038538 -
Car01g01033 388 Gene3D Transcription termination factor 3, mitochondrial 60 180 IPR038538 -
Car01g01033 388 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 380 - -
Car01g01033 388 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Car01g01033 388 SMART mt_12 132 167 IPR003690 GO:0003690|GO:0006355
Car01g01033 388 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Car01g01033 388 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Car01g01033 388 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Car01g01033 388 PANTHER CGI-12 PROTEIN-RELATED 26 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01033 Car-Chr1 9887886 9892057 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car01g01033 mTERF 3.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01033 K15032 - gmx:102663414 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00584 07 5100772 5103011 Car01g01033 01 9887886 9892057 PCT