Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01031 ATGATTTTGACACTCATCGAATTCTCCTGGAAATGGAAATCTCTGACATTGAAATCTTCACGCTTCAAATCCCTAAATCGAATCACAACAATACCCTTTCCAACCTCAAAATTCAATTCATCTCTTTCAACTCTCTCTTTGAACCACTTCTCCTCAACCACTTCAAATCTCGTACCCAATTGCACTTCCTCATCATCAGAAACTCCTCACAACGCTTCCAATGTCGTTCGTTTCGATTCATTAATCGCCATCTTCAAAAACTACGGTTTCTCTGATTCTCAGATAAATTACATCGTTAAACAAGCACCTAATGTGCTTAAATTAGACCCCCACAATAGGGTTTTGCCGAAGTTTGAATTTTTACACTCCAAAGGTGCTTCAAACTCCGATATTGTGGAGTTAGTGAGTAGAAGCCCTAGAATTCTCTATTCAAGCCTTGAAAATAGCATAATCCCTACTTTTGAATTGGTAAGAAGCTTCCTTCCATCTAATGAGAAAGCTATTGAACGTATACTTAAATGTAGATTTTTCTTTGGTCATTATCATGTTATTAGGAATGTTAAGATGTTGATTGATGATGGAGTTACTGACTCAAATATTAGATATTTGTTACTTAAAAGACCCTCTATACTATTGTCTTATGATATGAGGGATGCTTTGGATGAGGTTAAGGAAATGGGATTTGATGATCCTTCTAATGTGAATTTTTGTATAGCATTGTTAGCCAAAAGGGCCATGTCGAAATCTCGATGGGACGCGAAAGTTGTTGTCTTTAAGAAATGGGGTTGGTCTGATGAAATGGTTCTCGAAGCGTTTAGGAAGCGGCCCTTATGTATGCTAGTGTCGACGGATAAAATTAATAAGGTTATGAAGTTTTGGGTGAAGGAGTTGGGTTGGAACTCTTCGGTGCTTGTTAAAAGGCCGGAGATTTTTTCGTATAGTTTGGAGAATAGGATCGTTCCGAGGGCTTGTGTTGTCTTGTATTTGATCTCGAAAGGTTTGATAGAAAATAATGTTGAGTTGTCTACCCCATTTGGTGTTAATGAAAAGGTGTTTCTTGAAAAGTATGTGGAATGTTTTAAGGAGGAAAGGTGTTATTTGTTAAAGCTATACCGAGAAAAAATGGATGTTCAAGAAATCAGGGAGGATGGTGCAGCATCTAGAAGCTATTGA 1173 0.3751 MILTLIEFSWKWKSLTLKSSRFKSLNRITTIPFPTSKFNSSLSTLSLNHFSSTTSNLVPNCTSSSSETPHNASNVVRFDSLIAIFKNYGFSDSQINYIVKQAPNVLKLDPHNRVLPKFEFLHSKGASNSDIVELVSRSPRILYSSLENSIIPTFELVRSFLPSNEKAIERILKCRFFFGHYHVIRNVKMLIDDGVTDSNIRYLLLKRPSILLSYDMRDALDEVKEMGFDDPSNVNFCIALLAKRAMSKSRWDAKVVVFKKWGWSDEMVLEAFRKRPLCMLVSTDKINKVMKFWVKELGWNSSVLVKRPEIFSYSLENRIVPRACVVLYLISKGLIENNVELSTPFGVNEKVFLEKYVECFKEERCYLLKLYREKMDVQEIREDGAASRSY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01031 390 Gene3D Transcription termination factor 3, mitochondrial 171 364 IPR038538 -
Car01g01031 390 Pfam mTERF 247 352 IPR003690 GO:0003690|GO:0006355
Car01g01031 390 Pfam mTERF 84 229 IPR003690 GO:0003690|GO:0006355
Car01g01031 390 PANTHER CGI-12 PROTEIN-RELATED 30 377 IPR003690 GO:0003690|GO:0006355
Car01g01031 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 30 377 - -
Car01g01031 390 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Car01g01031 390 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Car01g01031 390 SMART mt_12 201 229 IPR003690 GO:0003690|GO:0006355
Car01g01031 390 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Car01g01031 390 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01031 Car-Chr1 9859612 9861305 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car01g01031 mTERF 4.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01031 K15032 - gmx:102666739 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01031 01 9859612 9861305 Car01g01031 01 9859612 9861305 ECH