Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01017 ATGAATTTACATAGTCTTCCTTCTTTTCATTTGGTAACTGTCTCTCACTGCCACTCATCCCATAATTTGTTAAGGCGATTCAAGAAAAACCTAAAGATGCAGAACGAAGATGGACAAATCACCGAGCTCTACATTCCTAGGAAATGTTCTGCTACAAACAGATTGATAACTGCTAAGGATCACGCTTCAGTTCAAATTAACATTGGTCATTTGGATGAGAGCGGTGTCTACAATGGTCACTTCTCCACTTTCGCTCTCTGTGGCTACGTTCGCGCACAGGGAGATGCCGACAGTGGACTTGATCGCCTGTGGCAGAAAAAGAAAGTTGAACTTAAACAGTAA 342 0.4211 MNLHSLPSFHLVTVSHCHSSHNLLRRFKKNLKMQNEDGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGHFSTFALCGYVRAQGDADSGLDRLWQKKKVELKQ 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01017 113 PANTHER 40S RIBOSOMAL PROTEIN S21 33 113 - -
Car01g01017 113 Gene3D - 28 112 IPR038579 -
Car01g01017 113 ProSitePatterns Ribosomal protein S21e signature. 43 51 IPR018279 GO:0003735|GO:0005840|GO:0006412
Car01g01017 113 PANTHER 40S RIBOSOMAL PROTEIN S21 33 113 IPR001931 GO:0003735|GO:0005840|GO:0006412
Car01g01017 113 Pfam Ribosomal protein S21e 33 109 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01017 Car-Chr1 9651900 9653518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01017 33 113 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 83.951 5.64e-51 154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01017 01 9651900 9653518 Car01g01017 01 9651900 9653518 ECH