Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01012 ATGAAACCTTATAACTTATCCTCACATAACAATCTTCTAACTATGtcttcttctttttcttcatggcttacttctccttcATGCACCCTTTTATCCAAAGATTCATCTTCATCTACACCACAATTCATACTTCAATGGTTAACCTTCATTTTCCTATCACCATGTCCACAAAGACTTCTTCTAACTTCTCTTGATTCCTTGTTTTTGTTATCCCTTTTAGCTTTTGCAGCTCAAAAACTCTATTTAAGGTTCAATTCAAGTTCAAACTCTAGCTCTTCATCAATCACAAAACCACTTCTGCAGGAGAAAGATTCTGACTATAGAATCACTTTTTGGTTCAAACTACCTTTGTTGGTAACTACTCTTTTGGCTATAACTTACACTGTTCTAGGAATATTGGCTTTTACTCAAACAAATTTTGCTTCATGGAAACAAATAGAAGCACTTTTTCGGTTTTTCCAAGCAATAGTTAACATTGTGATAGTGATTCTAATGGTACATGAGAAAAAGTTCAAAGCTTCCAAACACCCTTTATCACTAAGAATCTATTGGATATCAAACTTTGTGATTGCTTCTTTGTTTGCAGCTTCAGCTATTTTTCGTTTTATAAGTGTCGGCGAAGAAAGTTTGGAGCTTAGTTTGAGACTTGATGACATATTCGCATTGGTTAATCTTCCATTATCTGTTTTCTTTTTTGTTGTAGCAGTTAAAGGTTCATCAGGGATTCATGTGATAAGAATATCCGATGTAGTAGTAGCGTCACATCGATCGATTTCAATCGATAGAACTTTGAGTCCTTATGCTTATTCTTCATTTTTCTCCAAAACAGTTTGGTTATGGATGAACCCTTTGATCAACAAAGGTTACAAAACACCCCTTAAGCTAGAAGATGTTCCTTCACTTCCTATAAATTTTAGAGCAGAAAAAATGTCAGAACTTTTTCAAAACAATTGGCCAAAATCAGAGGAAAACAGTAACCACCCTGTTGGAAAAGCCTTATTTAGATGTTTTTGGAAACACATAACGTTCACTGGCTTCCTTGCAATCATTAGGCTTTGTGTTATGTACATTGGTCCAATGCTGATTCAAAGTTTTGTTGATTTCACATCAAGGAAAGATAGTACTCCTAGTGAAGGCATTGTTTTGATATTGATCCTTTTTGCAGCAAAATCAGTTGAAGTACTTAGTGTTCATCAATTCAATTTCCACTCTCAGAAACTTGGTATGCTTATTCGTTCGAGCATAATCGCTTCGGTTTACAAAAAAGGTTTAAGGTTGTCAAGTTCTTCAAGACAAGCTCATGGAACTGGACAGATTGTGAATCATATGGCTGTTGATGCTCAACAGCTCTCAGATTTGATGCTGCAGTTTCATCCTATATGGTTGATGCCATTACAAGTAGCTGCAGCATTGGCTCTAATGTATAGCTATGTTGGTGTATCAGTGCTTGCAGCACTTCTTGGAACAGCCATAGTTTTTCTTTTCACTCTATATAGAACCAAGAGTAGTAACAGCTTCCAGTTTCGGATAATGACGAGCCGTGATTTGAGGATGAAGGCGACAAACGAGTTGCTTAACAACATGCGTGTGATAAAATTTCAAGCTTGGGAGGACTATTTTGGAGAGAAGATTCAACGGTTTCGTGAAGCTGAGCACGGCTGGATTGCGAAATTCTTGTACTATTTTGCTGTTAACATGGGAGTTTTGTCCACTGCTCCATTAACTGTAACTGTTCTTACATTTGGAACAGCTACTATTCTTGGAGTTCCTTTGAATGCTGGCAGTGTTTTCACAATAACTTCAATCATAAAGATACTTCAAGAGCCAGTGAGGACTTTTCCTCAGGCTCTAATCATGATATCTCAAGCTACAATATCTTTAGGGAGGTTGGATGAGTTCATGATGAGTAAGGAAATGGACGAGAATGCAGTGGAAAGAGAGGAGAATTGTGATGCTGATGTAGCTGTGGAGATAAAAGATGGGAAATTTTCATGGGATGATAAGGACGAGATTGATGCTTTGAGGGTTGATGAGTTGGAAATTAAGAAAGGGGACCATGCTGCTATTGTAGGAACTGTTGGGTCAGGCAAGTCTTCATTGTTGGCTTCTGTGTTGGGAGAAATGTTCAAGATCTCAGGAAAGGTGAGAGTTTGCGGGACGACAGCATATGTAGCACAAACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTTGGTTTACCAATGAACACAGAGAAGTACAAGGAAGCTATAAGAGTGTGCTGCTTAGAGAAGGATCTTGAAATGATGGATGACAGCGATGAAACCGAAATTGGAGAGCGCGGTATTAACCTCAGTGGCGGCCAGAAACAACGTATACAACTTGCTAGAGCTGTATATCAGGACAGTGATATCTATCTCCTTGATGATATATTCAGTGCTGTTGATGCTCAAACTGGATCATTCATTTTTAAGGAATGTATCATGGGAGCTCTTAAAGATAAGACCATTTTACTTGTAACCCACCAAGTTGATTTCCTGCATAATGTTGACTCTATAATGGTAATGCGTGAAGGAAGAGTAGTACAAAGTGGAAAGTATGATGAACTTCTCAGAGCTGGCCTAGATTTTGGTGCACTTGTAGCTGCACATGAATCCTCTATGGAAATAACAGAAACAACTGATAAAGCTGGTGGTGATGATTCTATTCTGTCTCCAAAACTAGCTCGAATCCCTTCGAAAGAAAAAGAAAGCGTTGGCGAATCTCAAGATCAATCTAAGTCTGAAGATAAGGCTGCAGCAAAGCTCATTGAAGATGAGGAAAGGGAAACAGGAAGTGTGGACCTTACAGTATACAAACATTATTTCACTGAAGCATTTGGATGGTGGGGAATAGCACTCATGGTAGCAATGTCATTGGCTTGGATATTGTCATTTTTGGCTGGTGACTATTGGCTAGCAATTGCAACTGCTGATGATTCTAGCATTCCTTCTTTCACCTTCATTTTTGTTTATGCTATTATAGCTGTTGTTGCATGTATAGTTGTGATGGTAAGAGCTTTCTTGTTTACATATTGGGGTTTAAAGACATCTCAAAGCTTCTTCATTGGATTGCTTCGAAGTATCCTCCATGCACCTATGTCATTCTTCGATACAACTCCTTCTGGCAGGATTTTGAGTCGTGTATCAACTGATATACTTTGGGTGGATATATCAATTCCAATGTTGGTAAACTTTGTAATGATAGCATACTTATCATTATTCAGCATCCTCATTGTCACATGCCAGAATTCTTGGGAAACTGTCTTCCTTTTAATTCCACTGTTTTGGCTCAACAACTGGTATAGGAAATATTATCTTGCAACTTCAAGGGAATTGACTAGACTTGATTCTATCACAAAAGCTCCAGTGATTCATCACTTTTCAGAGACAATTTCTGGTGTTATGACAATCCGTAGCTTCAGAAAGCAGAATGAATTTTGTCAGGAAAATATTGACAGGGTGAATGAAAGTCTAAGAATGGATTTCCATAACAATGGTGCAAATGAATGGCTTGGTTTTAGGTTGGACTATATGGGAGTTGTTTTCCTTTGCATTGCCACACTTTTTATGATCTTTTTGCCGAGTGCTGTTGTTAAGCCAGAATATGTTGGTTTGTCTCTGTCCTATGGCTTGGCTCTGAGTGGCCTCATGTCAGCTACCATAACAATGACTTGCAATGTTGAGAACAAAATGGTTTCAGTTGAGAGGATAAAACAGTTTACAAACCTTCCATCAGAAGCTTCATGGAAAATAGCTGATAAGTCTCCTCCTCAGAATTGGCCTAGTCATGGCACTATAGAGTTAAACAATTTACAGGTTAGGTATAGGCCAAATACTCCTCTAGTTCTTAAAGGAGTGACTCTCACCATTGAAGGTGGAGAAAAAGTTGGTGTTGTTGGACGTACAGGGAGTGGAAAATCAACCCTTATTCAAGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGAAAAATAATCATTGATGGTATTAATATTTCCACTATTGGACTTCATGATTTGAGGTCACGTTTTGGAATTATTCCACAAGAGCCTGTCCTCTTTCAAGGAACAGTTAGAAGTAACATTGACCCTCTTGGATTGTATTCTGAAGATGAAATTTGGAAGAGTCTTGAACGCTGCCAATTGAAAGAAGTGGTAGCTGCAAAGCCTGAGAAACTTGAAGCTTCAGTGGTTGATGGTGGAGACAATTGGAGTGTGGGACAAAGGCAACTTCTATGTTTGGGAAGGATTATGTTAAAACGCAGTAAAATATTATTCATGGATGAAGCAACAGCATCAGTTGATTCACAAACTGATGCTGTAATACAAAAGATCATCAGAGAGGACTTTTCAGATCGTACAATTATTAGCATTGCTCATAGAATACAAACTGTTATGGATTGTGACAGGGTTTTGGTCATAGATGCAGGTTTTGCAAAGGAATTTGACAAGCCATCACGTTTGATGGAAAGGAATTCACTTTTTGGAGCATTGGTTAAGGAGTCTTCTAATAGATCAGCTTAA 4551 0.3788 MKPYNLSSHNNLLTMSSSFSSWLTSPSCTLLSKDSSSSTPQFILQWLTFIFLSPCPQRLLLTSLDSLFLLSLLAFAAQKLYLRFNSSSNSSSSSITKPLLQEKDSDYRITFWFKLPLLVTTLLAITYTVLGILAFTQTNFASWKQIEALFRFFQAIVNIVIVILMVHEKKFKASKHPLSLRIYWISNFVIASLFAASAIFRFISVGEESLELSLRLDDIFALVNLPLSVFFFVVAVKGSSGIHVIRISDVVVASHRSISIDRTLSPYAYSSFFSKTVWLWMNPLINKGYKTPLKLEDVPSLPINFRAEKMSELFQNNWPKSEENSNHPVGKALFRCFWKHITFTGFLAIIRLCVMYIGPMLIQSFVDFTSRKDSTPSEGIVLILILFAAKSVEVLSVHQFNFHSQKLGMLIRSSIIASVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMLQFHPIWLMPLQVAAALALMYSYVGVSVLAALLGTAIVFLFTLYRTKSSNSFQFRIMTSRDLRMKATNELLNNMRVIKFQAWEDYFGEKIQRFREAEHGWIAKFLYYFAVNMGVLSTAPLTVTVLTFGTATILGVPLNAGSVFTITSIIKILQEPVRTFPQALIMISQATISLGRLDEFMMSKEMDENAVEREENCDADVAVEIKDGKFSWDDKDEIDALRVDELEIKKGDHAAIVGTVGSGKSSLLASVLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPMNTEKYKEAIRVCCLEKDLEMMDDSDETEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDIFSAVDAQTGSFIFKECIMGALKDKTILLVTHQVDFLHNVDSIMVMREGRVVQSGKYDELLRAGLDFGALVAAHESSMEITETTDKAGGDDSILSPKLARIPSKEKESVGESQDQSKSEDKAAAKLIEDEERETGSVDLTVYKHYFTEAFGWWGIALMVAMSLAWILSFLAGDYWLAIATADDSSIPSFTFIFVYAIIAVVACIVVMVRAFLFTYWGLKTSQSFFIGLLRSILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLVNFVMIAYLSLFSILIVTCQNSWETVFLLIPLFWLNNWYRKYYLATSRELTRLDSITKAPVIHHFSETISGVMTIRSFRKQNEFCQENIDRVNESLRMDFHNNGANEWLGFRLDYMGVVFLCIATLFMIFLPSAVVKPEYVGLSLSYGLALSGLMSATITMTCNVENKMVSVERIKQFTNLPSEASWKIADKSPPQNWPSHGTIELNNLQVRYRPNTPLVLKGVTLTIEGGEKVGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINISTIGLHDLRSRFGIIPQEPVLFQGTVRSNIDPLGLYSEDEIWKSLERCQLKEVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFSDRTIISIAHRIQTVMDCDRVLVIDAGFAKEFDKPSRLMERNSLFGALVKESSNRSA 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01012 1516 CDD ABC_6TM_ABCC_D2 957 1251 IPR044726 GO:0140359
Car01g01012 1516 Coils Coil 1147 1167 - -
Car01g01012 1516 SUPERFAMILY ABC transporter transmembrane region 958 1256 IPR036640 GO:0005524|GO:0016021
Car01g01012 1516 MobiDBLite consensus disorder prediction 908 929 - -
Car01g01012 1516 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 656 879 IPR003439 GO:0005524
Car01g01012 1516 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 958 1239 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g01012 1516 Gene3D - 650 882 IPR027417 -
Car01g01012 1516 SUPERFAMILY ABC transporter transmembrane region 333 638 IPR036640 GO:0005524|GO:0016021
Car01g01012 1516 CDD ABCC_MRP_domain2 1274 1494 - -
Car01g01012 1516 SMART AAA_5 1302 1495 IPR003593 -
Car01g01012 1516 SMART AAA_5 683 864 IPR003593 -
Car01g01012 1516 Gene3D ABC transporter type 1, transmembrane domain 923 1257 IPR036640 GO:0005524|GO:0016021
Car01g01012 1516 Gene3D ABC transporter type 1, transmembrane domain 331 639 IPR036640 GO:0005524|GO:0016021
Car01g01012 1516 Gene3D - 1259 1509 IPR027417 -
Car01g01012 1516 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1276 1510 IPR003439 GO:0005524
Car01g01012 1516 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 76 1516 - -
Car01g01012 1516 CDD ABCC_MRP_domain1 656 856 - -
Car01g01012 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1265 1508 IPR027417 -
Car01g01012 1516 CDD ABC_6TM_ABCC_D1 343 630 IPR044746 GO:0140359
Car01g01012 1516 Pfam ABC transporter 678 806 IPR003439 GO:0005524
Car01g01012 1516 Pfam ABC transporter 1293 1441 IPR003439 GO:0005524
Car01g01012 1516 ProSitePatterns ABC transporters family signature. 781 795 IPR017871 GO:0005524
Car01g01012 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 653 874 IPR027417 -
Car01g01012 1516 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 343 622 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g01012 1516 Pfam ABC transporter transmembrane region 981 1203 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g01012 1516 Pfam ABC transporter transmembrane region 342 610 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g01012 1516 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 76 1516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01012 Car-Chr1 9598512 9607832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01012 656 868 Calmodulin-binding Proteins AT2G36910 31.718 6.17e-24 108