Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00993 ATGGTAAAAGACGAAGAACCTTCAAACAAATTCAACCAAGAAAACTCCGTTAATGACTTCGATGCAAAAGGTTACAGTCTCAGCGGCAAGGTCATGCTCTGCGCCATAATCATTCTCTTCTTCGTCGTCGTTTTAATGTTTTGTCTTCATATTTACGCTCGCTGGTACCTCCTCCGTTCTcgccgccgacgccgccttctccgccgtcgTACTCAGCTAGTTTTCTTCACCGACAGCCCTACAACCTCAGTCTCCGTCGTAACTTCCAGCGGACTCGACGCCGCCGTCATCGCCTCGCTCCCCTTGTTCTTCTACGATCCGAATACTCATCCGGAAAATGCTGCGGAATGCGCAGTTTGTTTGTCGGAGTTTGAACCCGGTGAATCGGGTCGGGTTTTGCCCAAATGTGATCACGCTTTTCATACCGAATGTATTGACATGTGGTTTCATTCTCATTCCACGTGTCCACTTTGTCGCGCACCCGTGGAGCCCACACCCGATTCGCAAACCCGGCCCGAAATTGTTCTAAAGATTTGCGAACCGGAAACCGGTTCAAGTTCGAGTTCGGTTGGGTTGAGGAGAAAGCCGTCTTTTGTGGGCGTGACAGTTGATGTTCCGGTTAGGGACGAATCGTGTATTGACTCGCCTTCTTCGACTCAGTCGTCGTTTCGATCGCCGATGAGTCGAATGATGTCGTTGAAGAGGATTCTTAGTAGAGAATGGAAAGGAAGCGTTTCTCCGTCGTCGTGCggtggtagtggtggtggttgtagctcggtggtTGAATTGAAGGTAGAACAAGGTGGACGAGATGAGACAGTGAGTTAG 828 0.4529 MVKDEEPSNKFNQENSVNDFDAKGYSLSGKVMLCAIIILFFVVVLMFCLHIYARWYLLRSRRRRRLLRRRTQLVFFTDSPTTSVSVVTSSGLDAAVIASLPLFFYDPNTHPENAAECAVCLSEFEPGESGRVLPKCDHAFHTECIDMWFHSHSTCPLCRAPVEPTPDSQTRPEIVLKICEPETGSSSSSVGLRRKPSFVGVTVDVPVRDESCIDSPSSTQSSFRSPMSRMMSLKRILSREWKGSVSPSSCGGSGGGCSSVVELKVEQGGRDETVS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00993 275 PANTHER RING-H2 FINGER PROTEIN ATL64 22 190 - -
Car01g00993 275 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Car01g00993 275 Pfam Ring finger domain 116 159 IPR001841 -
Car01g00993 275 CDD RING-H2_EL5_like 116 159 - -
Car01g00993 275 SMART ring_2 117 158 IPR001841 -
Car01g00993 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 22 190 - -
Car01g00993 275 SUPERFAMILY RING/U-box 97 169 - -
Car01g00993 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 167 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00993 Car-Chr1 9373850 9375240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00993 18 247 Rapid Response to Elicitors AT3G16720 49.049 3.99e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00993 - - lja:Lj6g3v1468220.1 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00993 01 9373850 9375240 Car01g00993 01 9373850 9375240 ECH
Car07g00550 07 4828218 4829036 Car01g00993 01 9373850 9375240 PCT