Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00987 ATGTGTGGAGGTGCTATCATTTCCGATTTCATTGGTGTGAAGCGTGACCGGAACCTTTGGTCGGAGATTGACCCTTCCGTTGATCTACTTGGTCTTGGTTCTATTGCTGCCGCTACTTCCAATGAGTCATCACCACCACTTTGTAACTTGCCTCAATTTTCAGACAAAAAAGTGGTAGCATGTGACAAGGAAGAGAAGAAGAGAAGCGTGGTAACTGTAGAAAAGGGTAAGAAGAACACTGGAGGAACCCGGGCCCGTAAGAATGTGTACAGAGGAATCAGACAAAGGCCTTGGGGCAAGTGGGCCGCTGAGATAAGGGACCCACAACAAGGTGTCCGTGTCTGGCTCGGTACTTTTTCAACAGCTGAAGAAGCCGCTAGAGCTTATGACGCCGCTGCTAAGCGCATCCGCGGTGACAAGGCCAAACTCAATTTCCCCGATGCCGCTGTCACCGCTTCTCCGCCAGCGAAGAAACGCTGCCTCAGCCCCGATCAGGCTAGCTCTCAATCTAGCTATGAGCCCATCGGGCTTGGCGAGGGAATGGATATCAAGGACCAAATCTCACAACTTGAATGGATCCTTGGCTTAGAACACGAACTGCCTCAGGCCCAAGTTGAGGCCCAGCCCAAGCCCACATCTGAGCCCGCCCATTTTACCCTACCTGATGCTGCTGACTGGGACAACAGCTTTTTGGATTTGTGGAATCTTGAAGAAATGGTTATGCCAATGAGTAACATGATTTACTAG 747 0.506 MCGGAIISDFIGVKRDRNLWSEIDPSVDLLGLGSIAAATSNESSPPLCNLPQFSDKKVVACDKEEKKRSVVTVEKGKKNTGGTRARKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFSTAEEAARAYDAAAKRIRGDKAKLNFPDAAVTASPPAKKRCLSPDQASSQSSYEPIGLGEGMDIKDQISQLEWILGLEHELPQAQVEAQPKPTSEPAHFTLPDAADWDNSFLDLWNLEEMVMPMSNMIY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00987 248 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Car01g00987 248 PANTHER DNA-BINDING DOMAIN 1 172 IPR044808 GO:0003700|GO:0009873
Car01g00987 248 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Car01g00987 248 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Car01g00987 248 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Car01g00987 248 MobiDBLite consensus disorder prediction 152 177 - -
Car01g00987 248 PANTHER EREBP TRANSCRIPTION FACTOR 1 172 - -
Car01g00987 248 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Car01g00987 248 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Car01g00987 248 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Car01g00987 248 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00987 Car-Chr1 9290355 9291985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00987 1 197 AP2-EREBP Transcription Factor Family AT3G16770 45.607 3.97e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g00987 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00987 K09286 - gmx:100817253 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00987 01 9290355 9291985 Car01g00987 01 9290355 9291985 ECH