Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00966 ATGAAACTTAACAACAAACTTTCCATGCCAACCCCAACTTCTACTTCAAATTTCGGTGACCTTATCGCCGACCAGTTTCCGGCTGGTCTCCGTGTACTTGTTGTCGATGATGACCCTACCTGCCTCACGATCCTTGAAAGAATGCTCCATTTTTGCCTCTACGAAGTTACAAAATGTAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTTTAAGTGATGTTCATATGCCTGACATGGATGGATTCAAACTTTTGGAACACATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCAGCCGATGATGGGAAAAATGTGGTAATGAAAGGTGTGAGACATGGTGCTTGTGATTACCTAATCAAACCGGTGCGAATCGAGGCTTTGAAGAATATATGGCAGCACGTGGTTAGGAAGAGAAAGAATGGTCGTAAAGATGTGGAGCAATCCGGTGGATTAGATGATGGAGATCGACGACAAAAGGCGTGTGATGATGTTGATTACTCGTCTTCAGCTAATgaaggcaagagctcgaggaagaggagggatgaggaagacgatgaagcggatgagaggGATGATTCTTCCACGTTAAAGAAGCCACGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGCTGTGAATCAATTGGGATTAGACAAAGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCGGGACTCACTAGAGAAAACGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTTCGAAGACTAAGCGGAGTTCCCCAGCAGCAAAGTAACATGAACAATTACTTTATCATGAGTCCACAAGAGTCATCCACATTTGGGGCAACTTCAATAAATGCAATTGATCTTCAAAATCTCCCACCGCAAAGTCTAGCCAAACTTCAATGGTCAACAGCAAAAGCGGGTGCGCCCTTTTCTCTAGTTGAGCAAAATAACCTTTTCGGTTTTGAGAACTCAAAATTAAGATTTGGAGAAGGGCAGCTGCAACATTCAAGCAGCAGTAAATCGACAAACTTTCTACATGGAATCCCTACAAACATGGAGCCAAAGCAGTTCGCTAATTTGCATCAGTCTGCACAATCCTTTGGCAGCATGAGTATGCGAGTCAATGCTTCTACTTCACAGAGAAGCCCCTGGTCAACACAGACAGCTCGGTTTCTACCAAGAGGTCAGATGCTAAATGAGAATACAAATTCTCATGCTACAAGGTTTCCATCATCTTTGGTGCAGCTTGCAGGACCCAAAGGAAATGTAATTGTTGCTGATACAAGCAACATAACTCCTTCCTATAATTCAGTTTCGCAAAGGTCTTCATTGTCGAGTTTTCCTATGAACCAAACCACTGAAATATCAGTCAATAGTTTCCCTCTTAGACGCACTCCAGGCATCTCAAGTATCAATTCAAAAGGTGCGTTTCGTGAGGAAGCTACTTCGGGAATTAAAGGGTCGGGCGGATTATTTCCAAGTTATGATATTTTTAATGAACTCCATCAGAAGTCCAATGACTGGGACTTGGCAAATGCAGGCCTGACATATGGTGATTCTCATCATGAAAATCCTTTACAAGGCCATCGTGGTGTTTCGTCTATCCAACCGACAGGACAAGTTAGAGATTCTACTTTGATTGGAAAAACTTTGATCTCCACTGGTGATGGTATGAGTCAAGGTAATATTCAAAATTTTGGTCAACACATCAATACATTTCTTGTTGACAATATCGTAAGGGTTAAAAGCGAAAGAATTCCCGATCCAAGTTCTGAGATTAACCCTTTCTCCGAGCAATTCGGTCACGTTGATCTCATGAGTGCACTTCTGAATCAGTACGAAGGCGTTGGACCGGTTGAAAATGAGTTTGACTTTGACGGATATTCCATCGACAATATTCCTGTCTAG 1947 0.4047 MKLNNKLSMPTPTSTSNFGDLIADQFPAGLRVLVVDDDPTCLTILERMLHFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVRHGACDYLIKPVRIEALKNIWQHVVRKRKNGRKDVEQSGGLDDGDRRQKACDDVDYSSSANEGKSSRKRRDEEDDEADERDDSSTLKKPRVVWSVELHQQFMAAVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVPQQQSNMNNYFIMSPQESSTFGATSINAIDLQNLPPQSLAKLQWSTAKAGAPFSLVEQNNLFGFENSKLRFGEGQLQHSSSSKSTNFLHGIPTNMEPKQFANLHQSAQSFGSMSMRVNASTSQRSPWSTQTARFLPRGQMLNENTNSHATRFPSSLVQLAGPKGNVIVADTSNITPSYNSVSQRSSLSSFPMNQTTEISVNSFPLRRTPGISSINSKGAFREEATSGIKGSGGLFPSYDIFNELHQKSNDWDLANAGLTYGDSHHENPLQGHRGVSSIQPTGQVRDSTLIGKTLISTGDGMSQGNIQNFGQHINTFLVDNIVRVKSERIPDPSSEINPFSEQFGHVDLMSALLNQYEGVGPVENEFDFDGYSIDNIPV 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00966 648 Gene3D - 30 160 - -
Car01g00966 648 SUPERFAMILY CheY-like 29 153 IPR011006 -
Car01g00966 648 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 615 IPR045279 GO:0009736
Car01g00966 648 ProSiteProfiles Response regulatory domain profile. 31 146 IPR001789 GO:0000160
Car01g00966 648 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 615 - -
Car01g00966 648 CDD REC_typeB_ARR-like 32 146 - -
Car01g00966 648 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 265 IPR017930 -
Car01g00966 648 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Car01g00966 648 Pfam Myb-like DNA-binding domain 211 261 IPR001005 -
Car01g00966 648 MobiDBLite consensus disorder prediction 149 206 - -
Car01g00966 648 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Car01g00966 648 Gene3D - 206 268 - -
Car01g00966 648 SMART REC_2 30 142 IPR001789 GO:0000160
Car01g00966 648 MobiDBLite consensus disorder prediction 150 174 - -
Car01g00966 648 Pfam Response regulator receiver domain 32 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00966 Car-Chr1 9048490 9052816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00966 64 648 Response Regulator Gene Family AT3G16857 46.708 4.99e-155 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Car01g00966 Response_reg 9.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00966 - K14491 gmx:100809583 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00966 01 9048490 9052816 Car01g00966 01 9048490 9052816 ECH
Car07g00529 07 4680104 4684537 Car01g00966 01 9048490 9052816 PCT