Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00961 ATGTCAGAGGGAGCTAGTCTTGTGTTAGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCAGAGGAAACAATTTTGTCGAGACAAACTTCTGTTAATCTTGTTCCTTTTATTGGACAAAGATTTGTCTCTCAAGAAGCTGCTTATGAATTTTATTGCAGTTTTGCTAAACAATTTGGTTTTTCTATTAGACGACACCGCACCCGAGGGAAAGACGGGGTTGGCCGGGGAGTAACAAGGAGGGATTTTACTTGCCACCGAGGTGGATTTCCCCAAAATAAACCTCCTGAAGATGGGAAGGTGCAAAGGAACCGCAAATCAACTCGCTGTGGTTGCCAAGCTTACATGCGTATTGTGAAAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATCCACAATCATGAGTTGTTAAAATCCAATGAAGTGCGTCCTCTTCCAGCGTACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCATGTTTGCTAAAGCTGGAATGTCGGTAAGGCAAATGTTAAGATTAATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCTTTCAGAAATGTGGATAAAGATAATGATGCTATTGATTTGATTGCAATGTGTAAGAGATTAAAAGATGAAAATCACAACTTCAAGTATGATTTCAAGATAGATAATAATAACAGGCTTGAACATATTGCATGGTCTTATGGATCATCAATTCAGTCGTATGAGGCATTTGGGGATGCTGTGGTATTTGATACAACCTACCGAGTAGAGGCTTATGACATGCTATTGGGAATTTGGCTTGGAGTGGATAATAATGGAATGATATGTTGCTTTAGTTGTGCACTTCTACGGGATGAAAATATGTCGTCTTTTTCATGGGCTTTAAAGGCTTTTTTGGGCTTCATGAAAGGAAAGGCTCCACTAACAATATTGACTGATCATAACACATGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGACACCAAACACGCCTTTTGTATATGGCATATTATTTCCAAGTTCTCTGATTGGTTTTCTTTACTTCTTGGATTACAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTCGAAGAAGGCTGGAGGCAAATGGTCGATAAATATGGACTCCACACAAATAAACATATTATTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGCGACACTTCTTTGCAGGATTGACCAGTACATGTCAGACCGAGTCCATTAGCTTTCTCATCCAACGGTTCTTAAGTGCCCAATCTCAACCAGATCGCTTTTTAGAGCAAGTGGCAGATATCGTTGATTTTAATGACCGCGCCGGAGCAAAGCAAAAGATACAAAAGAAAATGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATAGAATCACATGCCGCCACTATACTTACTCCTTATGCCTTGAGCAAACTCCAGGAAGAGCTAGTTTTGGCACCACAATATGCTTCCTTTCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGACCGATGGAGGTTGCAAAGTATTTTGGGTTCCTTGTCAAGAGCTAATCAGCTGCAGCTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACATGTGCTACGCGTCATGTCAACTAATAACTGTTTTCACATCCCCGATCAATATTTACCAGTCCGATGGCGAAGCATTGGTTCGTCTTCTGTTAACCATTTTCAGGTTGCAACTAGCAGGGATCAGCCTGAAAAAATACAATTTTTGGAATCATTGGTTTCAACTCTTCTAATGGAATCCGTTGAAACTGATGAACGGCTTGATGTTGCTTGTGACCAAGTTTCCATGGTGCTATCACGTATCAAAACTCTTCCTAGGTCATCATCACATGGGGTAAATGACATTGCATATAGTTATGCATCAGATTCATTGATCCTGCCAGAGGTAGAAGATACTGATGAAATGATTCACGGTTTTGCAATTGCGAATCCGCATGATTCAATGGCTTTAGACAAGTTAAAGGAGAGAAGGGCAAGAGATGGAGTCGAACTCACTAGGAAACGTAGGCAGTTCTCTGCGCCATTATGTGCACAATATGGACATGATGGATCAGATTGCTCAATAATGGCGGGTGATAATTTGAATGAAGACGCATTAGGGTATTTGTAG 2280 0.4096 MSEGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPPEDGKVQRNRKSTRCGCQAYMRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRPLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYDFKIDNNNRLEHIAWSYGSSIQSYEAFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMICCFSCALLRDENMSSFSWALKAFLGFMKGKAPLTILTDHNTWLKEAIAVEMPDTKHAFCIWHIISKFSDWFSLLLGLQYDEWKAEFHRLYNLEMVEDFEEGWRQMVDKYGLHTNKHIISLYSLRTFWALPFLRRHFFAGLTSTCQTESISFLIQRFLSAQSQPDRFLEQVADIVDFNDRAGAKQKIQKKMQKVCLKTGSPIESHAATILTPYALSKLQEELVLAPQYASFLVDEGCFQVRHHSQTDGGCKVFWVPCQELISCSCHLFEFSGILCRHVLRVMSTNNCFHIPDQYLPVRWRSIGSSSVNHFQVATSRDQPEKIQFLESLVSTLLMESVETDERLDVACDQVSMVLSRIKTLPRSSSHGVNDIAYSYASDSLILPEVEDTDEMIHGFAIANPHDSMALDKLKERRARDGVELTRKRRQFSAPLCAQYGHDGSDCSIMAGDNLNEDALGYL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00961 759 SMART 26again6 562 589 IPR006564 GO:0008270
Car01g00961 759 MobiDBLite consensus disorder prediction 79 113 - -
Car01g00961 759 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Car01g00961 759 Pfam SWIM zinc finger 561 584 IPR007527 GO:0008270
Car01g00961 759 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 739 - -
Car01g00961 759 ProSiteProfiles Zinc finger SWIM-type profile. 554 587 IPR007527 GO:0008270
Car01g00961 759 MobiDBLite consensus disorder prediction 1 22 - -
Car01g00961 759 Pfam MULE transposase domain 275 367 IPR018289 -
Car01g00961 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 739 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00961 Car-Chr1 9013408 9018275 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Car01g00961 MULE 4e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00961 - - gmx:100778434 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00961 01 9013408 9018275 Car01g00961 01 9013408 9018275 ECH