Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00960 ATGCAAAATAGTCATGAGAAACCTTTGTCTTCTCCCTCATCAACGTTGAAGCTATTTGGTTTTTCATTAACATCATCCAACACCCTTCCTTGTGAAAACAAGAGATACAAATGTCACTTTTGTCTCCGCGAATTTTCCAATTCTCAAGCGTTTGGAGGCCATCAAAACGCTCACAAGAAAGAGCGAAAAAGAGCTCAATTTCTTTCCATTATTCCGCATCATCAACGCTTTGTAGCGTCTTCGTCTTATAATCCTACAAGAGTAATGTTTTTTCATCGACATGCACAACCTTATAATGAAGAGGAGCCTCAAATTCCTTATGATACAGCCACATCAAGAAATAATGAGTCTTTCATGCAAGTACACAATAATATTATTGATGGTGATGATGTTGATCTTAGCTTGAGTCTAGCTTGTGGGCCTTTTAATTCTAAGGACAAAGAGTTTGAAAGGAGGTAA 459 0.3747 MQNSHEKPLSSPSSTLKLFGFSLTSSNTLPCENKRYKCHFCLREFSNSQAFGGHQNAHKKERKRAQFLSIIPHHQRFVASSSYNPTRVMFFHRHAQPYNEEEPQIPYDTATSRNNESFMQVHNNIIDGDDVDLSLSLACGPFNSKDKEFERR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00960 152 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Car01g00960 152 Gene3D Classic Zinc Finger 11 84 - -
Car01g00960 152 PANTHER ZINC FINGER PROTEIN 5 3 138 IPR044299 GO:0010090
Car01g00960 152 SUPERFAMILY beta-beta-alpha zinc fingers 32 63 IPR036236 -
Car01g00960 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Car01g00960 152 PANTHER ZINC FINGER PROTEIN 8-LIKE 3 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00960 Car-Chr1 8993850 8994308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00960 9 77 C2H2 Transcription Factor Family AT1G67030 42.529 6.55e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00960 - - cam:101493460 311.997