Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00953 ATGGCACAAAACTTAACGGGTCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGGGACCTGGATGTTGGGGATACCTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCTAATGAGATTCATGCGATACTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGGAAAGACGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTATTAAAGAGGCTCATGAGCACTTAAAAGTCGGTAACGAAGAGAGGATCCATGTATATTATGCACATGGCCAAGATAATCCAAGTTTTGTTCGAAGATGTTATTGGTTACTTGATAAGACTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAAGAGGTCTCTCAAGGTTCTCCTGTTACACCAGTAAATTCAAATTCAAGTTCAAGTTCTATTTCTGATCCACTTAAATCGTGGATTCTATCAGAAGATTTAGATTCTCAGACCAACGGTGCTCATACTGATGGTGAGATATGGCGGTTCAGTCATGAACAAAAGCTTCATGAGCTTAATACACTTGATTGGGATGACCTAGTGGCTTCTAATGTTAATACCGCTACTATACCTAATGGAGGTAATTGTTTCGAACCGTGTTTCTATCAACAAAATCAAAGCTTACTGAATGGCAGCTTTGGCAATGTTGCCGGTAATCCTTCAGCAGAAATTCCTTCTTTCGGTAATGTAACTCCGCCAGAGTCTGGGAGCAGTAATGTTTCTTACTTTCCAGAAAGTGTTAACCTTCAGAAGAATAATGTTGATTTCGTGGACACTTTATCCAATGAAGGCTTGCAAAGTCAGAACAGCTTTGGAATGTGGATGAACAATGCCATATCCGATACACCATGTTCTGTAGAAGTGTCGGCTCTTGAATCATCAATTCCTTCATCTGATCACGATCCATTTTCATCACTGCTGATGGATAATCCGCAATCTTCTCTTCCAGAACAAGTATTTAATCTCACTGAGGTGGCCCCTACATGGGCTTCTTCCACCGAGAAAACAAAGGTTCTTGTAACTGGATATTTTCATAATGATTATCAACACCTTGTGAAGTCCAATCTAGTGTGTGTCTGTGGTGAGATAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATCACCACATTCTCCTGGATTCGTAAATCTATTTTTGAGTTTCGATGGTCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTGCCACTTCAATGGAAGAGACACACAACTGGATCGAGTTTCGACTTCAGATGAGGCTTGCTCATTTGCTTTTCACAACACAAAAGAGCCTTGAAGTCGTCGCTAGTAAAATATCACCAACCGCATTGAAAGAGGCTGAAGTTTTTGCCTCAAAAACAATATTTATTTCCAAAAGTTGGCAACACTTTTTGAAGTCCTCCGACGGAAATAGAACTCCGTATCCCCAAGCCAAAAATACTTTGTTCGAAATTGCGTTGAAAAACAAACTAAGGGAATGGCTTTTGGAACAAATTGTTTTAGGACGTAAAACTACTGAGTATGATGCACAAGGGCAAGGTGTACTTCATTTGTGTACAATTTTAGGATACACTTGGGCTATTTCCTTATTTTCGTGGTCACGCTTGTCGCTCGATTTCCGTGACAAATTCGGATGGACAGCTCTTCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCGAAGCCGAACTTGGTCACGGATCCAACACCACAAAATCCCGGTGGCTGTACTGCTGCAGATCTTGCTTATGTGAAGGGATATGACGGTTTAGCCGCTTATCTTTCGGAAAAGTGTCTGGTAGAGCAGTTCAGTGCCATGAGCTTAGCTGGAAATATTAGTGGTTCACTGGAAACCATCACAACTGATCCGGTAAATCCTGAGAACCTTACTGAGGACCAGGTGTACCTAAAGGATACATTGGCAGCTTACCGAACAACGGCCGAGGCAGCAGCACGCATCCAAGCTGCATTTAGGGAACGCGCGCTAAAATTGCGATATAAGTCTGTTCAATTTTTAAGCCCAGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCGATGGCGGCCGCTGCTCGGATCCAGCATAGATTTCGTACATGGAAGTTGCGTAAGGAATTTCTCCACATGCGACGTCAGGCTATTAGAATTCAAGCTGCATTTAGGGGCTTTCAAGTGCGTAGACAATATCGCAAGATTATATGGTCGGTTGGAATTCTCGAGAAAGCGATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGCGGGCTTGAGGTGAATCCCTTCGAAGATGTGAAAGATGAGAAGCATGAAAATGATCGTGTTGAGAGGTCTGTGGTACGCGTACAAGCCATGTTCCGATCTAAGAAAGCGCAACAAGAGTATAGTAGGATGAAGATGGCACATAGTCAAGCACAGCTTGAACTTGAATTAGAAGAAATCATCAATTATGAAGTGGACATGTTAACAACAAAGACATCATAG 2682 0.4221 MAQNLTGQLVGSEIHGFHTLRDLDVGDTLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTIKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKTLEHIVLVHYRETQEVSQGSPVTPVNSNSSSSSISDPLKSWILSEDLDSQTNGAHTDGEIWRFSHEQKLHELNTLDWDDLVASNVNTATIPNGGNCFEPCFYQQNQSLLNGSFGNVAGNPSAEIPSFGNVTPPESGSSNVSYFPESVNLQKNNVDFVDTLSNEGLQSQNSFGMWMNNAISDTPCSVEVSALESSIPSSDHDPFSSLLMDNPQSSLPEQVFNLTEVAPTWASSTEKTKVLVTGYFHNDYQHLVKSNLVCVCGEISVPVEIVQVGVYRCWVSPHSPGFVNLFLSFDGHKPISQVVNFEYRTPILHDPATSMEETHNWIEFRLQMRLAHLLFTTQKSLEVVASKISPTALKEAEVFASKTIFISKSWQHFLKSSDGNRTPYPQAKNTLFEIALKNKLREWLLEQIVLGRKTTEYDAQGQGVLHLCTILGYTWAISLFSWSRLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGAKPNLVTDPTPQNPGGCTAADLAYVKGYDGLAAYLSEKCLVEQFSAMSLAGNISGSLETITTDPVNPENLTEDQVYLKDTLAAYRTTAEAAARIQAAFRERALKLRYKSVQFLSPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQHRFRTWKLRKEFLHMRRQAIRIQAAFRGFQVRRQYRKIIWSVGILEKAILRWRLKRKGFRGLEVNPFEDVKDEKHENDRVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAQLELELEEIINYEVDMLTTKTS 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00953 893 SUPERFAMILY E set domains 353 440 IPR014756 -
Car01g00953 893 ProSiteProfiles IQ motif profile. 734 763 IPR000048 GO:0005515
Car01g00953 893 SMART iq_5 775 797 IPR000048 GO:0005515
Car01g00953 893 SMART iq_5 699 721 IPR000048 GO:0005515
Car01g00953 893 SMART iq_5 840 862 IPR000048 GO:0005515
Car01g00953 893 SMART iq_5 756 774 IPR000048 GO:0005515
Car01g00953 893 SMART iq_5 733 755 IPR000048 GO:0005515
Car01g00953 893 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Car01g00953 893 Pfam Ankyrin repeats (3 copies) 531 618 IPR002110 GO:0005515
Car01g00953 893 Pfam IQ calmodulin-binding motif 778 797 IPR000048 GO:0005515
Car01g00953 893 Gene3D - 519 655 IPR036770 -
Car01g00953 893 ProSiteProfiles IQ motif profile. 842 870 IPR000048 GO:0005515
Car01g00953 893 ProSiteProfiles Ankyrin repeat profile. 589 621 IPR002110 GO:0005515
Car01g00953 893 SMART CG_1_2 28 146 IPR005559 GO:0003677
Car01g00953 893 Gene3D - 752 800 - -
Car01g00953 893 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 888 - -
Car01g00953 893 ProSiteProfiles IQ motif profile. 753 779 IPR000048 GO:0005515
Car01g00953 893 SMART ANK_2a 589 618 IPR002110 GO:0005515
Car01g00953 893 ProSiteProfiles IQ motif profile. 776 800 IPR000048 GO:0005515
Car01g00953 893 ProSiteProfiles Ankyrin repeat region circular profile. 589 617 - -
Car01g00953 893 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 888 - -
Car01g00953 893 Gene3D Immunoglobulins 348 443 IPR013783 -
Car01g00953 893 SUPERFAMILY Ankyrin repeat 524 651 IPR036770 -
Car01g00953 893 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00953 Car-Chr1 8894046 8906315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00953 29 880 CAMTA Transcription Factor Family AT3G16940 55.825 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Car01g00953 CG-1 9.7e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00953 K21596 - gmx:100819198 1309.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00953 01 8894046 8906315 Car01g00953 01 8894046 8906315 ECH
Car07g00521 07 4607495 4616572 Car01g00953 01 8894046 8906315 PCT