Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00950 ATGCCAGTTCTGGGTCCTCAAAAGGTGAAAGTTGGCTCTTCCAACAATGTATTAACTGCAAAAGACATCATCATTGCCACTGGTTCTGTTCCTTTTGTTCCTAAGGGAATTGAAGTTGATGGGAAGACTGTGATCACTAGTGACCATGCACTCAAATTGGAGACAGTTCCTGATTGGATAGCAATTGTTGGAAGTGGTTATATTGGCCTTGAATTCAGTGATGTATATACAGCACTTGGAAGTGAGGTTACTTTTGTTGAAGCTTTAGATCAGCTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCAGGAATATTGACTACCATACTGGCGTTTTTGCATCTAAGATCACTCCTGCAAGAGATGGAAAACCTGTAATGATAGAGCTCATTGATGCAAAGACCAAGGAACAAAAGGACACTTTAGAGGTGGATGCTGCATTAATAGCAACTGGAAGGACTCCATTCACACAAGGTCTTGGATTGGAGAATATTGATGTTGCAACACAGCGTGGGTTTGTTCCTGTGGATGAGCGCATGAAAGTAATTGATGCAAATGGAAACCTGGTCCCTCATTTATATTGTATTGGCGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGCGCACAAGGAATTTCAGTGGTTGAACAAGTCACTGGAGAAGATCATAAGCTCAATCATTTAAGCATACCAGCTGCTTGTTTCACTCACCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGGTTTGATGTAAGTGTTGCTAAGACAAGTTTTAAAGCTAACACAAAAGCCTTAGCAGAGAACGAAGGAGAGGGTCTTGCCAAGTTAATATACAGACCTGACAATGGAGAGATACTAGGAGTTCATATTTTTGGGTTGCATGCTGCAGATCTCATCCACGAGGCTTCCAATGCAATAGCATTAGGGACACGTATTCAGGATATTAAATTTGCCGTTCATGCACATCCAACTTTGTCTGAGGTGCTTGATGAGCTATTTAAATCAGCAAAGTGTAAAGCTTCACAAGAAGATCCACTGCTACTGAAACTTGTGCGCAACCACTGGAACTTTCCTCCGTCGCGAAAACCACCGTCAAATTCATCTCCGTCACCGCTAAATTCAGCAGCACCCGCTGCTATGTTTGTTGTCGGTTTCATTTGCAGTAACACTTCTCAAACACTCTCAAACCCCACAAAGATGAAAACTTTCCCCTCAATTCAACCACACCACAATTTCCATTTCCCAATATTTTTCTCTTCTACTTCCATAAGATTTTGCATCAGGGCTCAATTTCCTTTCTCTGCAAGGGTCATCTTTTGTCAGGCAAAATCTGGCACAAATGGTTCATTAACCGTAAAACTGTTGCCTCCAACCCTATTAGCAGCTGAAAAGGAAGAAGCCAAAGCTGTATTAACCTTGTTTTTGAAGAAACAAGGTATGAGCAATGCAAATGCAGCAAGAACCATCAACAAATCAGATCCTTTTATTGATCACCTTCTCTCAAAGCTTCACTTGAAACACAAAACTTGGTACCTTTCAGGGAGAGAGCTTACAACACTTGAGATCAGGGATGCTCTAATCTCTTATCTCGAATCCCTTTTTGAAGAGCATGGAAAAATTCTAGTGGATGTAGTGGAAAACTATCCAAACCCGCCTGTTAAGGATAAATCAGCTGTGCCAATTCCCCCTCCTAAGCCTAGTCCAGTGGTAGACTCGAAGAAACCTAAAGCTGTGTCTCGAGTGAGTGAGATAGACCCTGTTGCCGGAAATCTTCGCCCTCATATTGTTTATCTCATGGAACTTGGAATGGATATTGAGCAGATTAGGACTATTTTGCGACGATTTCCAGCTTTCGCCTATTATAGCTTGGAGGGTAAAATTAAGCCGGTGGTTGAGTTTTTTCTTGAACTTGGAGTACCAAAAGAAAAAATTCTTATTATTCTCATCAAAAGGCCTCAATTATGTGGAATCAGTCTATCCGAAAATCTTAAGCCCACCATGAAGTTCTTCGAATCTTTGGGCGTTGACAAGAAACAATGGGCAAAGGTGATCTATCGCTTCCCAGCTCTGCTAACTTACAGCAAACAGAAGATTAACGAAAGTGTTGATTTTCTCCATGAATTAGGCCTCTCAGAAGAGAGCATAGGTAAGATTATAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCAACAGCAACATACTTCCGTTCTTTAGGGGTTGATGTTGGCATTCTTCTATTCAAGTGTCCACAAAATTTTGGTCTTAGCATCGAGGCCAATATAAAGCCTGTAACAGAATTTTTCTTGGAGAGGGGATACACGTTGGAAGAAATCGGGATGATGATTTCGAGATACGGCGCATTGTACACTTTCAGCTTGACCGAGAATTTGATGCCAAAATGGGATTTCTTTATGACTATGGATTATCCAAATTCTGAGCTGATTAAATTCCCTCAGTTTTTTGGATATAGTTTAGAACAGAGGATTAAACCGAGATACGCACGCGTGAAAAGTTCAGGGGGTTTTTGA 2607 0.4158 MPVLGPQKVKVGSSNNVLTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLETVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFASKITPARDGKPVMIELIDAKTKEQKDTLEVDAALIATGRTPFTQGLGLENIDVATQRGFVPVDERMKVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGEDHKLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFDVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKCKASQEDPLLLKLVRNHWNFPPSRKPPSNSSPSPLNSAAPAAMFVVGFICSNTSQTLSNPTKMKTFPSIQPHHNFHFPIFFSSTSIRFCIRAQFPFSARVIFCQAKSGTNGSLTVKLLPPTLLAAEKEEAKAVLTLFLKKQGMSNANAARTINKSDPFIDHLLSKLHLKHKTWYLSGRELTTLEIRDALISYLESLFEEHGKILVDVVENYPNPPVKDKSAVPIPPPKPSPVVDSKKPKAVSRVSEIDPVAGNLRPHIVYLMELGMDIEQIRTILRRFPAFAYYSLEGKIKPVVEFFLELGVPKEKILIILIKRPQLCGISLSENLKPTMKFFESLGVDKKQWAKVIYRFPALLTYSKQKINESVDFLHELGLSEESIGKIITRCPNIVSYSVEDNLRPTATYFRSLGVDVGILLFKCPQNFGLSIEANIKPVTEFFLERGYTLEEIGMMISRYGALYTFSLTENLMPKWDFFMTMDYPNSELIKFPQFFGYSLEQRIKPRYARVKSSGGF 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00950 868 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 240 351 IPR004099 GO:0045454
Car01g00950 868 Pfam mTERF 477 718 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 Pfam mTERF 715 866 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 Pfam mTERF 609 796 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 Pfam Pyridine nucleotide-disulphide oxidoreductase 10 221 IPR023753 GO:0016491
Car01g00950 868 PANTHER DISULFIDE OXIDOREDUCTASE 3 365 - -
Car01g00950 868 Gene3D Transcription termination factor 3, mitochondrial 670 868 IPR038538 -
Car01g00950 868 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 3 365 - -
Car01g00950 868 SUPERFAMILY FAD/NAD(P)-binding domain 15 230 IPR036188 -
Car01g00950 868 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 239 354 IPR016156 GO:0016491|GO:0050660
Car01g00950 868 Gene3D - 239 363 IPR016156 GO:0016491|GO:0050660
Car01g00950 868 PRINTS Pyridine nucleotide disulphide reductase class-I signature 236 257 - -
Car01g00950 868 PRINTS Pyridine nucleotide disulphide reductase class-I signature 153 167 - -
Car01g00950 868 PRINTS Pyridine nucleotide disulphide reductase class-I signature 201 208 - -
Car01g00950 868 PRINTS Pyridine nucleotide disulphide reductase class-I signature 327 347 - -
Car01g00950 868 PRINTS Pyridine nucleotide disulphide reductase class-I signature 23 32 - -
Car01g00950 868 PRINTS Pyridine nucleotide disulphide reductase class-I signature 59 84 - -
Car01g00950 868 PRINTS Pyridine nucleotide disulphide reductase class-I signature 305 320 - -
Car01g00950 868 SMART mt_12 629 660 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 SMART mt_12 769 800 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 SMART mt_12 805 836 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 SMART mt_12 736 767 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 SMART mt_12 701 731 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 SMART mt_12 837 868 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 SMART mt_12 665 696 IPR003690 GO:0003690|GO:0006355
Car01g00950 868 PRINTS FAD-dependent pyridine nucleotide reductase signature 152 168 - -
Car01g00950 868 PRINTS FAD-dependent pyridine nucleotide reductase signature 186 208 - -
Car01g00950 868 PRINTS FAD-dependent pyridine nucleotide reductase signature 20 38 - -
Car01g00950 868 PRINTS FAD-dependent pyridine nucleotide reductase signature 59 77 - -
Car01g00950 868 Gene3D - 32 159 IPR036188 -
Car01g00950 868 Gene3D - 9 221 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00950 Car-Chr1 8875139 8884147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00950 3 357 Acyl Lipid Metabolism Gene Families AT4G16155 90.986 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car01g00950 mTERF 5.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00950 K00382 - gmx:100803176 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00950 01 8875139 8884147 Car01g00950 01 8875139 8884147 ECH
Car07g00519 07 4576474 4583225 Car01g00950 01 8875139 8884147 PCT