Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00929 ATGGCATCGTCAAGCAAAGCTTCAATTTCACAACATCAAGTTCATATCCACACAACAGAACAACAAGATAATAACAAAAAAGAATCATCATCAATGAGAAAAGCCATAGCACAATACACAGAAGATGCAAGACTTCACGCCGTTTTCGAACAATCCGGCGCCAACTCTTTCGATTACTCTCAATCCATCCGTTTAACTTCCCAACAATCACCTCTCCCCGAACAACAAATCACTGCTTACTTATCACGAATCCAACGTGGCGGTTTCATTCAACCTTTCGGTTCTATGATCGCCGTTCATGAACCTTCTTTTCGTCTTATCGCTTACTCCGATAACGCACGTGACATGCTCGGTATTCCACCTCAATCTGTTCCTTCTCTCGATGATGACAATTCTTCCAACACTTTCTTCGCATTCGGTGTCGATGTTCGTTCACTTTTCACTAATTCGAGTTCAATTCTTCTCGAGAAAGCTTTCTCCGCTCGCGAAATTAGTCTCATGAACCCTGTTTGGATCCACTCTCGTTCTACTGGTAAACCTTTTTATGGAATTCTTCACCGGATTGATGTTGGTGTTGTTATTGACTTGGAACCTGCGAGATCTGAGGATCCTGCGCTTTCAATTGCTGGTGCTGTTCAATCTCAGAAACTCGCTGTTCGCGCTATTTCGCAGCTTCAATCGCTTCCTGGTGGTGATGTTAAGCTTCTTTGTGATGCTGTTGTGGAGAGTGTTAGGGAATTAACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAAGATGAACATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTATCCTGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAACAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCACCTGTTAGGGTTTTTCAGGATGAGGCACTGGTGCAGCCACTTTGTTTGGTTGGGAGTACGCTTCGTGCTCCCCACGGTTGTCATGCTCAGTATATGGCAAATATGGGGTCGATTGCTTCGTTGGTTATGGCTGTTATTATTAATGGGAATGATGAAGATGGTGTTGGGATTGGCGGTACGGGAAGAAGTTCCATGAGATTGTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTTATGCAGGCTTTTGGGATTCAGTTGAATATGGAGCTTCAGTTAGCGGTGCAGTCGTTGGAAAAGCGGGTTTTGAGGACACAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCCTACTGGGATCATTACTCAGAGTCCTAGTATAATGGATTTGGTTAAGTGTGATGGTGCTGCTTTGTACTACCAAGGAAATTACTACCCTTTGGGTGTTACCCCGACGGAGTCTCAGATAAGAGATATTATAGAGTGGTTGTTGGCTTTCCATGGTGATTCAACGGGTTTGAGTACTGATAGTTTAGCTGATGCTGGCTATCCCGAGGCTGCTTCTCTTGGGGATGCTGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTTCTTTTCTGGTTTAGGTCTCATACAGCGAAAGAGATTAAATGGGGTGGTGCGAAGCATCACCCGGAGGATAAGGACGATGGGCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCGTTTTTAGAAGTGGTGAAGAGCCGTAGTTTACAGTGGGAGAATGCAGAGATGGATGCAATTCACTCCTTGCAGCTTATCCTCAGAGACTCGTTTAAGGAAGCTGAGAATAACGATTCAAAGGCTGTTGTGCATACCCATATGGAAGGACTAGAGTTGCAAGGCGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTCGATGTTGATGGCCGTATAAATGGTTGGAATGCAAAGGTTTCTGAATTAACGGGACTTCTGGTAGAGGAGGCTATGGGTAAGTCGTTGGTTCATGATCTTGTGTATAATGAGTCTCAAGAAACTGTGGACAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAGTTGAGGACGTTTGGCCTGGGCAATCAAAACAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCGAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGATCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGCCCAAATCCATTGATCCCGCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGTGGTTGGAGCCGTGCAGATGTCATTGGCAAATTGTTGGTCGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCAGATGCTATGACAAAATTCATGATTGTCTTGCACAATGCACTTGGTGCACACGACACAGACAAATTCCCGTTTTCATTTCTTAACCGGCATGGAAAGTATGTGCAGACTTTCTTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGCGCTTTTTGCTTTTTGCAAATTGTGAGCCCTGAACTTCAACAGGCTCTGTCGGTCCAGAGACAACAGGATAATAGTTCCTTAGCTAGGATGAAAGAATTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGACTACATGCCTGACCGATGAGCAAAAGCAGTTTATTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTGGAGAGCATCGAGGATGGGTCTCTGGAGCTTGAAAAGAGGGAATTCTTGCTTGAGAACGTCATAAATGCAGTTGTTAGCCAAGTAATGCTATTGCTAAGAGAAAGAAAATTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGCTGATCAATTGAGGATTCAACAAGTCTTGGCTGATTTCTTAATGAATATGGTGCGTTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATGTCCAAGAATAAAACAAATTTCAGATGGGCTCACTCTTCTGCATGCTGAATTTAGGATGGTGTGTCCTGGTGAAGGTCTTCCGCCGGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCATGAAGGCTTGGGGTTGAGCATGAGCAGGAAGATTATAAAGTTGATGAATGGCGAAGTCCAATATGTCAGGGAGGCAGAACGATGCTACTTCTTGGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTCTAAAAATGTTAATTAG 3417 0.4276 MASSSKASISQHQVHIHTTEQQDNNKKESSSMRKAIAQYTEDARLHAVFEQSGANSFDYSQSIRLTSQQSPLPEQQITAYLSRIQRGGFIQPFGSMIAVHEPSFRLIAYSDNARDMLGIPPQSVPSLDDDNSSNTFFAFGVDVRSLFTNSSSILLEKAFSAREISLMNPVWIHSRSTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEDGVGIGGTGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGIQLNMELQLAVQSLEKRVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPEAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLQWENAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMEGLELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYNESQETVDKLLSRALKGEEDKNVEIKLRTFGLGNQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGAHDTDKFPFSFLNRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALSVQRQQDNSSLARMKELAYICQEVKNPLSGIRFTNSLLETTCLTDEQKQFIETSAACEKQMLKIIRDIDLESIEDGSLELEKREFLLENVINAVVSQVMLLLRERKLQLIRDIPEEIKTLAVYADQLRIQQVLADFLMNMVRYAPSPDGWVEIHVCPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHNSRWVTHEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVLLELPVTRRSSKNVN 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00929 1138 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 900 960 IPR036097 GO:0000155|GO:0007165
Car01g00929 1138 Gene3D - 213 575 IPR029016 -
Car01g00929 1138 PANTHER PHYTOCHROME 11 1132 - -
Car01g00929 1138 Pfam PAS fold 763 882 IPR013767 GO:0006355
Car01g00929 1138 Pfam PAS fold 632 747 IPR013767 GO:0006355
Car01g00929 1138 PANTHER TWO-COMPONENT HISTIDINE KINASE 11 1132 - -
Car01g00929 1138 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
Car01g00929 1138 Pfam His Kinase A (phospho-acceptor) domain 908 968 IPR003661 GO:0000155|GO:0007165
Car01g00929 1138 SMART pas_2 762 832 IPR000014 -
Car01g00929 1138 SMART pas_2 631 698 IPR000014 -
Car01g00929 1138 MobiDBLite consensus disorder prediction 1 33 - -
Car01g00929 1138 Pfam Phytochrome region 427 602 IPR013515 GO:0006355|GO:0009584
Car01g00929 1138 MobiDBLite consensus disorder prediction 1 18 - -
Car01g00929 1138 SUPERFAMILY GAF domain-like 212 411 - -
Car01g00929 1138 ProSiteProfiles PAS repeat profile. 629 700 IPR000014 -
Car01g00929 1138 CDD HisKA 904 960 IPR003661 GO:0000155|GO:0007165
Car01g00929 1138 SMART HKATPase_4 1016 1131 IPR003594 -
Car01g00929 1138 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 979 1128 IPR036890 -
Car01g00929 1138 Gene3D - 968 1134 IPR036890 -
Car01g00929 1138 CDD PAS 774 882 IPR000014 -
Car01g00929 1138 Gene3D PAS domain 776 886 - -
Car01g00929 1138 Pfam PAS fold 79 199 IPR013654 GO:0006355
Car01g00929 1138 Gene3D PAS domain 624 757 - -
Car01g00929 1138 Gene3D - 887 967 - -
Car01g00929 1138 ProSitePatterns Phytochrome chromophore attachment site signature. 332 341 IPR013516 -
Car01g00929 1138 PRINTS Phytochrome signature 147 169 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 247 266 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 332 353 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 444 464 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 529 548 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 562 580 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 632 648 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 651 666 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 725 742 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 PRINTS Phytochrome signature 745 765 IPR001294 GO:0006355|GO:0009584
Car01g00929 1138 Pfam GAF domain 233 414 IPR003018 GO:0005515
Car01g00929 1138 CDD HATPase_Phy-like 1015 1127 IPR044767 -
Car01g00929 1138 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 232 404 IPR016132 -
Car01g00929 1138 PIRSF Phytochrome_conventional 12 1136 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Car01g00929 1138 TIGRFAM sensory_box: PAS domain S-box protein 636 751 IPR000014 -
Car01g00929 1138 CDD PAS 640 711 IPR000014 -
Car01g00929 1138 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1017 1122 IPR003594 -
Car01g00929 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 634 743 IPR035965 -
Car01g00929 1138 Gene3D PAS domain 83 335 - -
Car01g00929 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 880 IPR035965 -
Car01g00929 1138 SUPERFAMILY GAF domain-like 422 600 - -
Car01g00929 1138 SMART HisKA_10 904 968 IPR003661 GO:0000155|GO:0007165
Car01g00929 1138 ProSiteProfiles Histidine kinase domain profile. 911 1131 IPR005467 -
Car01g00929 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 203 IPR035965 -
Car01g00929 1138 Gene3D - 419 592 IPR043150 -
Car01g00929 1138 SMART gaf_1 232 424 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00929 Car-Chr1 8603699 8609926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00929 2 1129 Histidine Kinase Gene Family AT4G16250 73.016 0.0 1744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00929 K12121 - gmx:100794865 1968.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00929 01 8603699 8609926 Car01g00929 01 8603699 8609926 ECH