Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00928 ATGAAAACCCAAGAAGCAGAAGGAGAACTTCTGAAGAAGATTGAAAGGCTTGAAGCTGGTCACGTTCACCTCAAGCAAGAAATGTCAAAGCTTAAGCTTTCACAGCGTCGAAGGTCTCATTCAGTTTCACCACAACGTTCAAGGTTAGGTGCTTCTGTTGTGAATAACAAAGGGTCTGCTTCACCTCTTCAAAGAGAGAGTCGTAGTAGCAATGATCTTCATAATCAAAATGGTGGCAAGTATCTCAATATTTTGCAGTCAATTGGTCATTCTGTTCATATATTGGATCTTCAATGTCGTATTATTTACTGGAACCCTAGTGCTGAAAATCTATATGGTCATGCAGCAGAAGAAGTTCTTGGGCATGATGGGATTGAGGTACTTGTAGACCCTAGTGAATTTGACTTAGCTAATGATATATTCAACCGTGTGAAAATGGGTGAGAGTTGGACAGGTCAATTCCCTGTTAAGAATAAGATGGGAGATAGAAGTGGCATTAGTAATAAATTTGGTCTTGACCCTCAGCAGCCACTTCAAACTGCTCTAGCGTTGAAAATCTCGAATTTGGCTTCAAAGATGAGTAATAAAGTCAAGTCTAAAATCCGGACTCGAGAAAATAATGTTGGTGGAGAAGGAGGGAGCGGAGAAAGTCATCATTTAGAGCATGGTTTCTCAGACGGGGGTGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACGCCCGCAGGAGAGGTGCCGCCGTCTCCTTTTGGTGTATTTTCTCACGTCGAAGAGAGATCACAAGGGAAAACTACGAGAAACTCTGGTGATGAGAGTGAAGAAAAACCTATACACAAAATCATAACTTCTAAGGCTGAAGCATGGATTCAAAAGAAAACTATGTCATGGCCATGGAAAGTAAATGATAGGGAAGGATCCGAGTCAAAGAACGTTCGTGTTTCTTGGCCTTGGTTGCTGGGTGATCAAGAAAAAGAGCCAGCTAATCAGAAGAACATGTCTTCTGGATTGAAGCTGGAAAGCCGAGCTGGTGAAAGTTATCAACCTGTTAATAATGAAGCTTCAGGAGGATCGTGGTCCTCGTTCAATGCTAACAGCACAAGTAGTACCAGCAGTTGCGGGAGTGGCAGCGGTAGCAGTTCTGCTGCCAATAATAGAGTGGACGTTGACACCGATTGTTTAGATTACGAAATTTTGTGGGAGGATTTGACTATTGGAGAGTCAATTGGGCAAGGTAGTTCTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATACAGTCCTTCAGACAAGAGGTGTCTCTCATGAAAAGACTTCGCCATCCAAATATTCTACTCTTTATGGGGGCAGTAACTTCACCTCAGCGTCTATGCATTGTAACCGAGTTTCTCCCACGCGGAAGCTTATTTCGTTTGCTCCAGAGAAACACGGCAAAACCTGATTGGAGACGGAGAGTTCACATGGCCTTAGATATTGCACGAGGTGTAAATTATCTTCATCGTTGCAACCCTCCTATCATCCATCGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAAAATTGGACTGTGAAGGTTGGTGATTTCGGTCTTTCACGTATCAAACATGAAACCTATCTCACGACTAAAACTGGAAAAGGCACGCCTCAATGGATGGCACCAGAAACTCTTCGTAACGAACCCTCAAATGAGAAGTCCGACGTTTACAGCTTTGGGGTGATAATGTGGGAACTTGCAACTGAAAAAATCCCTTGGGATACACTCAATGCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGGCTAGAAATTCCGGAAGATGTCGATCCACAGTGGGCTTCTATAATCGAGAGTTGCTGGCATAGTGATCCGGCTAGCCGACCAACATTCCAGGAACTTTTGGACAGGCTTAAAGAACTGCAGAGGCGGTATGCCATTCAGTTCCAAGCAGCCAGATCTGCTGGTGGGGACAGCACGCAAAAGGAGCCCTAG 2049 0.4378 MKTQEAEGELLKKIERLEAGHVHLKQEMSKLKLSQRRRSHSVSPQRSRLGASVVNNKGSASPLQRESRSSNDLHNQNGGKYLNILQSIGHSVHILDLQCRIIYWNPSAENLYGHAAEEVLGHDGIEVLVDPSEFDLANDIFNRVKMGESWTGQFPVKNKMGDRSGISNKFGLDPQQPLQTALALKISNLASKMSNKVKSKIRTRENNVGGEGGSGESHHLEHGFSDGGDQREDANSSGASTPAGEVPPSPFGVFSHVEERSQGKTTRNSGDESEEKPIHKIITSKAEAWIQKKTMSWPWKVNDREGSESKNVRVSWPWLLGDQEKEPANQKNMSSGLKLESRAGESYQPVNNEASGGSWSSFNANSTSSTSSCGSGSGSSSAANNRVDVDTDCLDYEILWEDLTIGESIGQGSSCGTVYHALWYGSDVAVKVFSKQEYSDDVIQSFRQEVSLMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTAKPDWRRRVHMALDIARGVNYLHRCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRIKHETYLTTKTGKGTPQWMAPETLRNEPSNEKSDVYSFGVIMWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDVDPQWASIIESCWHSDPASRPTFQELLDRLKELQRRYAIQFQAARSAGGDSTQKEP 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00928 682 Gene3D PAS domain 90 169 - -
Car01g00928 682 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 27 164 - -
Car01g00928 682 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 169 680 - -
Car01g00928 682 SMART pas_2 79 145 IPR000014 -
Car01g00928 682 Gene3D Phosphorylase Kinase; domain 1 396 481 - -
Car01g00928 682 MobiDBLite consensus disorder prediction 215 229 - -
Car01g00928 682 TIGRFAM sensory_box: PAS domain S-box protein 81 161 IPR000014 -
Car01g00928 682 Coils Coil 14 34 - -
Car01g00928 682 SMART serkin_6 403 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00928 682 MobiDBLite consensus disorder prediction 44 74 - -
Car01g00928 682 CDD STKc_MAP3K-like 409 656 - -
Car01g00928 682 ProSiteProfiles Protein kinase domain profile. 403 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00928 682 SUPERFAMILY PYP-like sensor domain (PAS domain) 81 161 IPR035965 -
Car01g00928 682 MobiDBLite consensus disorder prediction 195 280 - -
Car01g00928 682 PRINTS Tyrosine kinase catalytic domain signature 564 574 IPR001245 GO:0004672|GO:0006468
Car01g00928 682 PRINTS Tyrosine kinase catalytic domain signature 627 649 IPR001245 GO:0004672|GO:0006468
Car01g00928 682 PRINTS Tyrosine kinase catalytic domain signature 517 535 IPR001245 GO:0004672|GO:0006468
Car01g00928 682 PRINTS Tyrosine kinase catalytic domain signature 478 491 IPR001245 GO:0004672|GO:0006468
Car01g00928 682 PRINTS Tyrosine kinase catalytic domain signature 583 605 IPR001245 GO:0004672|GO:0006468
Car01g00928 682 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 164 - -
Car01g00928 682 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 169 680 - -
Car01g00928 682 ProSiteProfiles PAS repeat profile. 77 148 IPR000014 -
Car01g00928 682 MobiDBLite consensus disorder prediction 260 280 - -
Car01g00928 682 MobiDBLite consensus disorder prediction 347 384 - -
Car01g00928 682 Pfam PAS fold 81 152 IPR013767 GO:0006355
Car01g00928 682 Gene3D Transferase(Phosphotransferase) domain 1 482 681 - -
Car01g00928 682 MobiDBLite consensus disorder prediction 27 74 - -
Car01g00928 682 Pfam Protein tyrosine and serine/threonine kinase 403 656 IPR001245 GO:0004672|GO:0006468
Car01g00928 682 CDD PAS 92 163 IPR000014 -
Car01g00928 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Car01g00928 682 SUPERFAMILY Protein kinase-like (PK-like) 391 656 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00928 Car-Chr1 8583122 8589445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00928 9 676 MAP Kinase Kinase Kinase AT3G06640 52.989 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Car01g00928 PK_Tyr_Ser-Thr 1.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00928 - - gmx:100800867 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00928 01 8583122 8589445 Car01g00928 01 8583122 8589445 ECH
Car07g00505 07 4455880 4462252 Car01g00928 01 8583122 8589445 PCT