Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00923 ATGGCTTCTAATTCATCATGGTTGTATCTTTCTCCTTCAACATTCACAATGAAAATTCTCATTTTTGTCTTGTTTTTTGTACCATATTGTGCTCTTGCCTTTGATTCACAAATGGTCATAGATTCTCCTATGTTAACACAAAAGGTTGGAACAAATCGCACTATTAAAGTTGATATCAATGGAAATGGGGAATTTAAATCAGTTCAAGCTGCAATTGATTCCATTCCTGAAGGAAATTCTAATTGGGTCATAGTTCATATTAGGAAAGGAGTATATAGGGAAAAAGTGCACATTCCAAAGACTAAGCGTTACATATTCATGAGAGGGAATGGAAGAGGAAGAACTGCCATAGTTTGGTCTCAAAGCTCTTCTGACAATATAGATTCTGCCACCTTCAAAGTTGAAGCCACCGATTTCATTGCTTTTGGAATTAGCTTTAAGAATGACGCACCAACAGGGGTTGCTTATACTTCACAGAATCAATCAGTGGCAGCATTTGTGGCAGCAGACAAAGTAGCATTTTACCATTGTGCATTTTACAGTACACATAACACACTCTTTGATTACAAAGGTAGACATTATTATGAGTCCTGTTACATTCAAGGCTCCATTGATTTCATATTTGGTCGTGGCAGAACCATCTTTCACAATTGTGAGATGTTTGTGGTTGACGACAAGAGGATCAATATTCGTGGGTCAATCACAGCTCAAAACAGAGAAAGTGAACGTGAGATGAGTGGATTTATATTTATCAAAGGCAGAGTTTATGGCATTGGTGGGGTGTATTTAGGAAGAGCTAAAGGTCCTTATTCAAGGGTCATTTTTGCTAAGACATACCTCTCCAAGACCATTGTCCCAGAAGGATGGACCAATTGGAGTTATGATGGAAGCACAGAGAATCTTTACCATGCGGAGTACAAGTGCCATGGACCAGGAGCTACATCGGAGGGACGAGCGCCTTGGTCGAGGCAGCTTAGCGACGAAGATGTGGCTCCATTTTTATCCGTTGATTACATTGATGGCAAGAATTGGTTGCCGGCGTGGCAATAA 1050 0.4 MASNSSWLYLSPSTFTMKILIFVLFFVPYCALAFDSQMVIDSPMLTQKVGTNRTIKVDINGNGEFKSVQAAIDSIPEGNSNWVIVHIRKGVYREKVHIPKTKRYIFMRGNGRGRTAIVWSQSSSDNIDSATFKVEATDFIAFGISFKNDAPTGVAYTSQNQSVAAFVAADKVAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRTIFHNCEMFVVDDKRINIRGSITAQNRESEREMSGFIFIKGRVYGIGGVYLGRAKGPYSRVIFAKTYLSKTIVPEGWTNWSYDGSTENLYHAEYKCHGPGATSEGRAPWSRQLSDEDVAPFLSVDYIDGKNWLPAWQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00923 349 SUPERFAMILY Pectin lyase-like 51 347 IPR011050 -
Car01g00923 349 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Car01g00923 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 348 - -
Car01g00923 349 Pfam Pectinesterase 56 341 IPR000070 GO:0030599|GO:0042545
Car01g00923 349 Gene3D - 49 349 IPR012334 -
Car01g00923 349 PANTHER PECTINESTERASE 67-RELATED 17 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00923 Car-Chr1 8522341 8524258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00923 15 345 Carbohydrate Esterase AT5G47500 37.037 1.53e-75 235