Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00921 ATGGAGGAGGAGAAGAGAGAGGTTCACACTCACACTCACACAAACCCCACCAATTCATCATCCACCACCACCATGACATTTTCCGATGAGATTCCGAGCATAAGcaccaccaccaccaacaccaacaacaacaacacAAGTTTATTCCCTTTTCAACCTTCAATCTCCACCATCTTTGACACGTTACCATCTTCTTCGTGTGACCAAAAAGCTTCTTCTTATGGATTCATAGATTTATTGGGTACCCACGATTACAACAACAACAATTTTTTGTTATCAGATTGGGTTACTATTCCTACCACCACCGCTACAATCAACCACCGTCTTCCGTCTCCGGTGAGCTCTAACATTCCGGATTCCTCTGAGGTGTCGAACACTCCGGCGTCGCCGAATTCGTGTTCAATTTCATCGTCTTCTAATGAAGCCACCGTTAATAATACCATTGAACAACATAGAGGTAAACTTTCAGGGAACGAACAAGAAACAGAGTTACAAGGAGATGACCAACATCAACACAAGACTCACAAACAGTTGAAAGCAaagaagaagaacgaaaagaagcaaagagaaCCGAGATTTGCTTTCATGACAAAGAGTGAAATTGATCACCTAGACGATGGGTTTAGGTGGCGTAAATATGGCCAAAAAGCTGTAAAAAATAGTCCTTATCCCAGaagctactatcgttgcaccacggcaagttgcggcgtgaaaaagcgcgtggagcgttcatccgatgattcttccattgtcgtcactacttacgagggtcaacacacgcatccTTCTCCTGCCACGTCACGTTCTAGCTTCGGCTTCGGTACTGGCTTCGGTGGCGGTGCGTTTCTTGCTTCGGGTTCACACTCACAATTTGTGCTACCACGTACTCACAACGCGGTTCTTCCACCACACGCTCCAACATTGTACAATTATACTAATATTACTACTACACCCCCTCTTTCTTCTCTTCCTGGTTCCACTGGTAGTTACGTTAATACGTCGTCGTTTGATGGTTTTGGAAGTATTAACGATGCTTTGTTAAGAGACAATGGGTTGCTTCAGGACATTATTCAAATGAAAAAAGAGGAGATTAAGGACTCAATCAACGAACATTAA 1116 0.3629 MEEEKREVHTHTHTNPTNSSSTTTMTFSDEIPSISTTTTNTNNNNTSLFPFQPSISTIFDTLPSSSCDQKASSYGFIDLLGTHDYNNNNFLLSDWVTIPTTTATINHRLPSPVSSNIPDSSEVSNTPASPNSCSISSSSNEATVNNTIEQHRGKLSGNEQETELQGDDQHQHKTHKQLKAKKKNEKKQREPRFAFMTKSEIDHLDDGFRWRKYGQKAVKNSPYPRSYYRCTTASCGVKKRVERSSDDSSIVVTTYEGQHTHPSPATSRSSFGFGTGFGGGAFLASGSHSQFVLPRTHNAVLPPHAPTLYNYTNITTTPPLSSLPGSTGSYVNTSSFDGFGSINDALLRDNGLLQDIIQMKKEEIKDSINEH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00921 371 SUPERFAMILY WRKY DNA-binding domain 196 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g00921 371 SMART WRKY_cls 204 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00921 371 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 73 359 - -
Car01g00921 371 MobiDBLite consensus disorder prediction 106 153 - -
Car01g00921 371 MobiDBLite consensus disorder prediction 13 27 - -
Car01g00921 371 Gene3D WRKY domain 189 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g00921 371 MobiDBLite consensus disorder prediction 106 189 - -
Car01g00921 371 MobiDBLite consensus disorder prediction 154 174 - -
Car01g00921 371 MobiDBLite consensus disorder prediction 1 27 - -
Car01g00921 371 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00921 371 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 359 IPR044810 GO:0003700
Car01g00921 371 ProSiteProfiles WRKY domain profile. 199 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00921 Car-Chr1 8491545 8494292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00921 174 363 WRKY Transcription Factor Family AT2G47260 54.271 3.14e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car01g00921 WRKY 2.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00921 - - mtr:MTR_2g033820 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00921 01 8491545 8494292 Car01g00921 01 8491545 8494292 ECH
Car01g00921 01 8491545 8494292 Car07g00494 07 4366352 4368082 PCT