Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00908 ATGGAAGAAGTGAAGGGAAGTGAAAACAACTCAAACATCACCATGCTCCAAACCGAAGATGAAATGGATCTTCGAAGAGGCCCATGGACCGTTGATGAGGATCTTGCACTCATCAATTACATTGCTACTCATGGTGAAGGTCGATGGAACTCCCTTGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGTAGATTAAGATGGTTGAATTATCTTCGTCCAGATGTTCGACGTGGTAACATCACACTCGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGCTGGGGAAATCGATGGTCTAAAATTGCTCAATATTTACCGGGACGAACCGACAACGAGATCAAGAATTATTGGAGAACTAGGGTCCAAAAACATGCGAAACAACTCAAATGTGACGTAAATAGCAAGCAATTTAAAGATGCCATGCGCTACCTTTGGATGCCACGTCTAGTGGAGCGCATCCAAGCCGCGGCTTccaccgccacgaccaccaccacTAATAATAATGGTTCTCCAAGTGTTACAACAACGATCACTAGCACCAACAATACGATGTCATGCAACCTAAACACCAATTTTGAGGTTCATAGTGGGAACACGTTAACTCCAATAATTATGAACAACAATTTATGTGGTTCATATGTGACACAAAGTTATACTCCGGAAAATAGTAGCAACGGTTCAGACTCATTTGGTACACAAGTTTCACCTATCTCGGAATTAAATCAAGATTATTACAATGTGCCGGTTGGAAGTAACAACAACAATAATAACCCTAATTGTGATTATTTTCAACAAGCTCAACAATTTGGCTTTTTGGATTGCATTACTAGCCCTACCGGGTTGTTCCCTCAAATGGATTTTAATTCCGTGGAACCAAACACACCTTGGATTAATCAAGGGGACAATTTCTGGAATGATGAAAACATGTTGCTCTTTCAACAACTCAACGACAACATGTGA 969 0.3973 MEEVKGSENNSNITMLQTEDEMDLRRGPWTVDEDLALINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTATTTTTNNNGSPSVTTTITSTNNTMSCNLNTNFEVHSGNTLTPIIMNNNLCGSYVTQSYTPENSSNGSDSFGTQVSPISELNQDYYNVPVGSNNNNNNPNCDYFQQAQQFGFLDCITSPTGLFPQMDFNSVEPNTPWINQGDNFWNDENMLLFQQLNDNM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00908 322 SMART sant 25 75 IPR001005 -
Car01g00908 322 SMART sant 78 126 IPR001005 -
Car01g00908 322 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Car01g00908 322 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Car01g00908 322 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Car01g00908 322 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 319 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car01g00908 322 Gene3D - 83 146 - -
Car01g00908 322 CDD SANT 28 73 IPR001005 -
Car01g00908 322 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Car01g00908 322 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Car01g00908 322 PANTHER MYB TRANSCRIPTION FACTOR 6 319 - -
Car01g00908 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Car01g00908 322 Gene3D - 23 79 - -
Car01g00908 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00908 Car-Chr1 8283487 8285682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00908 1 266 MYB Transcription Factor Family AT3G06490 59.259 6.08e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g00908 Myb_DNA-binding 6.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00908 K09422 - gmx:100805341 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00908 01 8283487 8285682 Car01g00908 01 8283487 8285682 ECH