Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00904 ATGGTGTTGGAAACGGAAATCATTTATCAACAAAGCATTCCCGTATTGGATGTTAAGTATCATCTTTGTGTTGCACAAGAACACGGTGTTAAGGTTGAGGTATCAGCATCTAATGCTGTTCCGGTTTTTAGCAAAGTCAGGGTTTCCTCTGAATCCATTTCAACCGAAACGTCTCTCTTTGAATCGACTGAGACTTGCTCGGAGATGAGTACAGATTCTATTTTAGAGAATCCTGTTTCAAGGTTTACACCGAACATTCGTTCTGGTAGCTGTGCTGATATTGGACCCAGGGGATCAATGGATGATGAACACATTCAAATAGATGATCTAGCTGCCCACCTTGGATTTGTGTTTGAATACCCTATACCTAGTGCTTTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGTTTTTGTTAAGGACAATGCTATGAAATTATTTTTTGAAGATGCTACTATGCTGCAATCATATGACACTGATGCACTTTTGCTGAAGAGGTTGGAAGATTCTCATCGGAAAGCTTTTCTAGGTGCTGACCTTGCATTGGCTGATGAACAGAGTATTAGTAGTTCTTGTGGAACAACAGCACTGACTGCCCTTATACTTGGAAGACATTTACTGGTTGCTAATGCTGGCGATTGCCGAGCAGTTCTTTGTAAGCGAGGAGTAGCTGTTGACCTGTCTCAAGACCACAGACCAAGTTATTTACCAGAGCGCAAGAGAGTGGAAGAGTTGGGTGGTTTTATTGATGATGGATATCTCAATGGTTATCTTTCTGTCACTCGTGCCTTAGGCGATTGGGACTTAAAATTACCAGTTGGTTCTGTTTCACCTCTTAGTGCTGAGCCAGATGTTCAGGTAGTCACATTGACTGAGGAAGACGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCAAGCCAGGATGCAGTTAGTTTTGTTCGTCGTGGAATAAGAAGGCACGATGACCCACAACAATGTGCTAGAGAGCTAGTCAAAGAAGCATTGCGCCTACACACAACAGATAATCTTACCGTAATTGTTATATGCTTGTCTCCCGTCGAAAGCATTGTTGAATCCTGTCCACCCCACAGGCGAAGATTCCGGCCTTGCTCTCTGTCTGACGAGGCTCGAAACAAATTGAGGAGCTTGCTAGAAAGTAACTGA 1185 0.4321 MVLETEIIYQQSIPVLDVKYHLCVAQEHGVKVEVSASNAVPVFSKVRVSSESISTETSLFESTETCSEMSTDSILENPVSRFTPNIRSGSCADIGPRGSMDDEHIQIDDLAAHLGFVFEYPIPSAFYAVFDGHGGPDAAVFVKDNAMKLFFEDATMLQSYDTDALLLKRLEDSHRKAFLGADLALADEQSISSSCGTTALTALILGRHLLVANAGDCRAVLCKRGVAVDLSQDHRPSYLPERKRVEELGGFIDDGYLNGYLSVTRALGDWDLKLPVGSVSPLSAEPDVQVVTLTEEDEFLIIGCDGIWDVMSSQDAVSFVRRGIRRHDDPQQCARELVKEALRLHTTDNLTVIVICLSPVESIVESCPPHRRRFRPCSLSDEARNKLRSLLESN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00904 394 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Car01g00904 394 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 381 - -
Car01g00904 394 SMART PP2C_SIG_2 102 357 IPR001932 -
Car01g00904 394 Gene3D - 67 361 IPR036457 -
Car01g00904 394 SUPERFAMILY PP2C-like 79 359 IPR036457 -
Car01g00904 394 CDD PP2Cc 86 357 IPR001932 -
Car01g00904 394 SMART PP2C_4 77 355 IPR001932 -
Car01g00904 394 PANTHER PROTEIN PHOSPHATASE 2C 1 381 IPR015655 GO:0004722|GO:0006470
Car01g00904 394 ProSiteProfiles PPM-type phosphatase domain profile. 87 357 IPR001932 -
Car01g00904 394 Pfam Protein phosphatase 2C 95 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00904 Car-Chr1 8176302 8178982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00904 1 391 PP2C-type Phosphatase Gene Family AT1G48040 56.456 4.49e-145 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Car01g00904 PP2C 1.8e-65 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00904 K14803 - gmx:100798957 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00904 01 8176302 8178982 Car01g00904 01 8176302 8178982 ECH
Car07g00467 07 4160839 4163522 Car01g00904 01 8176302 8178982 PCT